Variant report

Variant	rs34924
Chromosome Location	chr5:111316974-111316975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:111002125..111004615-chr5:111314425..111317158,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10050950	0.81[EUR][1000 genomes]
rs10059738	0.89[ASN][1000 genomes]
rs10063079	0.88[ASN][1000 genomes]
rs10463623	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10463624	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11241146	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13169766	0.84[ASN][1000 genomes]
rs1493453	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1494585	0.94[ASN][1000 genomes]
rs2047070	0.95[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2048155	0.86[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs255910	0.84[ASN][1000 genomes]
rs255928	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs255929	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs255930	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs25790	0.80[GIH][hapmap];0.85[JPT][hapmap]
rs26539	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs26540	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs26541	0.91[ASN][1000 genomes]
rs26542	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs26543	0.90[CEU][hapmap];1.00[CHB][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs26545	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs26546	0.85[ASN][1000 genomes]
rs26557	0.92[ASN][1000 genomes]
rs26558	0.92[ASN][1000 genomes]
rs26559	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs26560	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs26561	0.94[ASN][1000 genomes]
rs26562	0.94[ASN][1000 genomes]
rs26563	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs27535	0.94[ASN][1000 genomes]
rs34928	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34930	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34931	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34941	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34942	1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35303575	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35658682	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36061964	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36069145	0.94[ASN][1000 genomes]
rs36133922	0.92[ASN][1000 genomes]
rs41142	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs42308	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs466033	0.85[JPT][hapmap]
rs474807	0.88[ASN][1000 genomes]
rs490983	0.91[ASN][1000 genomes]
rs4957627	0.82[JPT][hapmap]
rs504582	0.89[ASN][1000 genomes]
rs508089	0.91[ASN][1000 genomes]
rs593236	0.90[ASN][1000 genomes]
rs624694	0.92[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs6881837	0.90[ASN][1000 genomes]
rs6882073	0.88[ASN][1000 genomes]
rs6882205	0.90[ASN][1000 genomes]
rs712660	0.91[ASN][1000 genomes]
rs7710690	0.91[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs7730997	0.92[ASN][1000 genomes]
rs7735316	0.91[ASN][1000 genomes]
rs9326846	0.81[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs980888	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111309800-111319600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:111311200-111320000	Weak transcription	Left Ventricle	heart
3	chr5:111311200-111320000	Weak transcription	Right Ventricle	heart
4	chr5:111312800-111319000	Weak transcription	NHLF	lung
5	chr5:111313200-111318600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:111313800-111319000	Weak transcription	Osteobl	bone
7	chr5:111314000-111319400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:111315600-111319200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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