Variant report

Variant	rs36133922
Chromosome Location	chr5:111286124-111286125
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10050950	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10059738	0.94[ASN][1000 genomes]
rs10063079	0.92[ASN][1000 genomes]
rs10463623	0.97[ASN][1000 genomes]
rs10463624	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11241146	0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12520308	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13169766	0.84[ASN][1000 genomes]
rs1389849	0.80[EUR][1000 genomes]
rs1493453	0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1494585	0.96[ASN][1000 genomes]
rs2047070	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2048155	0.97[ASN][1000 genomes]
rs255910	0.81[ASN][1000 genomes]
rs255928	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs255929	0.85[ASN][1000 genomes]
rs255930	0.84[ASN][1000 genomes]
rs25790	0.91[EUR][1000 genomes]
rs26539	0.86[ASN][1000 genomes]
rs26540	0.86[ASN][1000 genomes]
rs26541	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs26542	0.86[ASN][1000 genomes]
rs26543	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs26545	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs26546	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs26557	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs26558	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs26559	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs26560	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs26561	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs26562	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs26563	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs27535	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34924	0.92[ASN][1000 genomes]
rs34928	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs34930	0.97[ASN][1000 genomes]
rs34931	0.97[ASN][1000 genomes]
rs34941	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs34942	0.88[ASN][1000 genomes]
rs35303575	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35658682	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36061964	0.92[ASN][1000 genomes]
rs36069145	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41142	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs42308	0.91[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs466033	0.86[EUR][1000 genomes]
rs474807	0.93[ASN][1000 genomes]
rs490821	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs490983	0.96[ASN][1000 genomes]
rs504582	0.94[ASN][1000 genomes]
rs505575	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs508089	0.96[ASN][1000 genomes]
rs512479	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs560063	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs593236	0.95[ASN][1000 genomes]
rs608642	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs622972	0.80[EUR][1000 genomes]
rs624694	0.93[ASN][1000 genomes]
rs638424	0.82[EUR][1000 genomes]
rs6881837	0.94[ASN][1000 genomes]
rs6882073	0.93[ASN][1000 genomes]
rs6882205	0.95[ASN][1000 genomes]
rs712660	0.96[ASN][1000 genomes]
rs7710690	0.93[ASN][1000 genomes]
rs7730997	0.97[ASN][1000 genomes]
rs7735316	0.93[ASN][1000 genomes]
rs9326846	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs980888	0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111283600-111287000	Enhancers	NHDF-Ad	bronchial
2	chr5:111284200-111288800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:111284400-111288800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:111285000-111286200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:111285000-111286200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:111285000-111286200	Weak transcription	HSMM	muscle
7	chr5:111285000-111286200	Weak transcription	NH-A	brain
8	chr5:111285000-111286400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:111285000-111286400	Weak transcription	NHEK	skin
10	chr5:111285000-111286600	Weak transcription	HMEC	breast
11	chr5:111285000-111287800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:111285000-111288800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr5:111285000-111288800	Weak transcription	HSMMtube	muscle
14	chr5:111285000-111288800	Weak transcription	NHLF	lung
15	chr5:111285000-111290600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:111285000-111290600	Weak transcription	Adipose Nuclei	Adipose
17	chr5:111285800-111291600	Enhancers	Osteobl	bone
18	chr5:111286000-111287200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr5:111286000-111290200	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links