Variant report

Variant	rs26546
Chromosome Location	chr5:111354650-111354651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10463623	0.87[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs10463624	0.86[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs11241146	0.87[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs1493453	0.83[ASN][1000 genomes]
rs1494585	0.81[ASN][1000 genomes]
rs1507844	0.88[CEU][hapmap]
rs1540687	0.87[CEU][hapmap]
rs2047070	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2048155	0.80[JPT][hapmap];0.82[ASN][1000 genomes]
rs255910	0.81[ASN][1000 genomes]
rs255928	0.90[ASN][1000 genomes]
rs255929	0.87[ASN][1000 genomes]
rs255930	0.85[ASN][1000 genomes]
rs25790	0.87[CEU][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs26539	0.89[ASN][1000 genomes]
rs26540	0.89[ASN][1000 genomes]
rs26541	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs26542	0.89[ASN][1000 genomes]
rs26543	0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs26545	0.82[ASN][1000 genomes]
rs26557	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs26558	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs26559	0.88[ASN][1000 genomes]
rs26560	0.89[ASN][1000 genomes]
rs26561	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs26562	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs26563	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs27535	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34924	0.88[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.85[ASN][1000 genomes]
rs34928	0.82[ASN][1000 genomes]
rs34930	0.82[ASN][1000 genomes]
rs34931	0.82[ASN][1000 genomes]
rs34941	0.85[ASN][1000 genomes]
rs34942	0.87[CHB][hapmap];0.90[JPT][hapmap];0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs35303575	0.83[ASN][1000 genomes]
rs35658682	0.81[ASN][1000 genomes]
rs36069145	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36133922	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs41142	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs42308	0.82[ASN][1000 genomes]
rs466033	0.95[CEU][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs490821	0.82[EUR][1000 genomes]
rs560063	0.84[EUR][1000 genomes]
rs624694	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs7710690	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs7730997	0.80[ASN][1000 genomes]
rs9326846	0.83[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs980888	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1015302	chr5:111339022-111802947	Enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv537861	chr5:111339022-111802947	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	esv2829846	chr5:111341445-111435769	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
5	esv2763484	chr5:111352353-111371959	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111354000-111355200	Enhancers	GM12878-XiMat	blood

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