Variant report

Variant	rs1507844
Chromosome Location	chr5:111247862-111247863
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10042500	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10050950	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10071922	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10072425	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1116411	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11959944	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12187919	0.91[ASN][1000 genomes]
rs12516031	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12516065	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12520308	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1389849	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1389850	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1389851	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1494592	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1540687	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1603082	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2048155	0.80[EUR][1000 genomes]
rs25790	0.83[CEU][hapmap];0.91[CHB][hapmap];0.88[ASN][1000 genomes]
rs26543	0.80[EUR][1000 genomes]
rs26545	0.80[EUR][1000 genomes]
rs34928	0.80[EUR][1000 genomes]
rs34930	0.81[EUR][1000 genomes]
rs34931	0.80[EUR][1000 genomes]
rs35091869	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35303575	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35658682	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs36133922	0.83[EUR][1000 genomes]
rs42308	0.81[EUR][1000 genomes]
rs4296844	0.83[ASN][1000 genomes]
rs4596433	0.83[ASN][1000 genomes]
rs466033	0.83[CEU][hapmap];0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs490821	0.88[ASN][1000 genomes]
rs491101	0.89[ASN][1000 genomes]
rs4957627	0.96[CHB][hapmap];0.87[ASN][1000 genomes]
rs4957977	0.86[JPT][hapmap]
rs4957978	0.86[JPT][hapmap]
rs497739	0.82[EUR][1000 genomes]
rs505575	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs512479	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs560063	0.88[ASN][1000 genomes]
rs586262	0.87[ASN][1000 genomes]
rs608642	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs622972	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs638424	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6594545	0.91[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs6594552	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6871530	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6898801	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6898959	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6899197	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7704226	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7716521	0.96[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs7728826	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9637887	0.82[ASN][1000 genomes]
rs980888	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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