Variant report

Variant	rs1541345
Chromosome Location	chr12:120083798-120083799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11064888	0.81[ASN][1000 genomes]
rs16949584	1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs2285594	1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs2519538	0.87[EUR][1000 genomes]
rs278121	1.00[CHB][hapmap]
rs35490437	0.88[ASN][1000 genomes]
rs3759400	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4269	0.88[ASN][1000 genomes]
rs55775618	0.88[ASN][1000 genomes]
rs56096252	0.88[ASN][1000 genomes]
rs61068064	0.88[ASN][1000 genomes]
rs7297192	1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs7297487	1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs7308115	0.88[ASN][1000 genomes]
rs7309710	0.88[ASN][1000 genomes]
rs7311975	1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs73215355	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73221264	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221268	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052595	chr12:119992580-120132038	Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv541616	chr12:119992580-120132038	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120081600-120083800	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr12:120082600-120083800	Enhancers	Fetal Muscle Leg	muscle
3	chr12:120082600-120083800	Enhancers	Psoas Muscle	Psoas
4	chr12:120083400-120083800	Enhancers	Fetal Muscle Trunk	muscle
5	chr12:120083400-120083800	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr12:120083600-120094400	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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