Variant report

Variant	rs7308115
Chromosome Location	chr12:120142856-120142857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:120140527..120144777-chr12:120146433..120151524,7	MCF-7	breast:
2	chr12:120134899..120136482-chr12:120141154..120143008,2	K562	blood:
3	chr12:120140732..120143749-chr12:120148419..120151327,3	MCF-7	breast:
4	chr12:120136031..120138952-chr12:120142421..120143997,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255692	Chromatin interaction
ENSG00000122966	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11064888	0.94[ASN][1000 genomes]
rs1541345	0.88[ASN][1000 genomes]
rs16949584	0.94[ASN][1000 genomes]
rs2285594	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35490437	1.00[ASN][1000 genomes]
rs3759400	0.88[ASN][1000 genomes]
rs4269	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55775618	1.00[ASN][1000 genomes]
rs56096252	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56972459	0.81[ASN][1000 genomes]
rs59595036	0.81[ASN][1000 genomes]
rs61068064	1.00[ASN][1000 genomes]
rs7136614	0.81[ASN][1000 genomes]
rs7297192	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7297487	1.00[ASN][1000 genomes]
rs7302793	0.81[ASN][1000 genomes]
rs7309710	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7311975	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73215355	1.00[ASN][1000 genomes]
rs73221264	0.88[ASN][1000 genomes]
rs73221268	0.88[ASN][1000 genomes]
rs7958992	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120108200-120161000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:120116800-120201800	Weak transcription	Fetal Heart	heart
3	chr12:120117000-120145800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr12:120119600-120147000	Weak transcription	Brain Substantia Nigra	brain
5	chr12:120119800-120149800	Weak transcription	Placenta	Placenta
6	chr12:120120200-120148000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr12:120120400-120145600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr12:120121000-120151800	Weak transcription	Primary T cells from cord blood	blood
9	chr12:120121200-120173400	Weak transcription	Primary B cells from cord blood	blood
10	chr12:120122200-120160800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr12:120123400-120182000	Strong transcription	Dnd41	blood
12	chr12:120126000-120154000	Weak transcription	Right Ventricle	heart
13	chr12:120126400-120150000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr12:120126600-120158000	Weak transcription	Colonic Mucosa	Colon
15	chr12:120127600-120143200	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr12:120130800-120182200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr12:120131200-120154200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr12:120131200-120161600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr12:120131600-120154400	Weak transcription	Small Intestine	intestine
20	chr12:120132000-120145400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr12:120132200-120151200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr12:120132200-120152400	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr12:120132400-120146000	Weak transcription	Brain Germinal Matrix	brain
24	chr12:120132400-120151400	Weak transcription	Pancreas	Pancrea
25	chr12:120132400-120153400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr12:120132800-120162000	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr12:120133000-120147800	Weak transcription	Stomach Mucosa	stomach
28	chr12:120134800-120154400	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr12:120135800-120148000	Weak transcription	Esophagus	oesophagus
30	chr12:120136000-120145800	Weak transcription	HMEC	breast
31	chr12:120136000-120147800	Weak transcription	Brain Hippocampus Middle	brain
32	chr12:120136000-120151200	Weak transcription	Gastric	stomach
33	chr12:120136000-120156000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr12:120137000-120143600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr12:120137000-120159800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr12:120138000-120147200	Weak transcription	Fetal Kidney	kidney
37	chr12:120138200-120147600	Weak transcription	Fetal Intestine Large	intestine
38	chr12:120139600-120144200	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr12:120139600-120159600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr12:120139800-120145200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr12:120139800-120145200	Weak transcription	Hela-S3	cervix
42	chr12:120139800-120146600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr12:120139800-120146600	Weak transcription	K562	blood
44	chr12:120139800-120147600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr12:120139800-120147600	Weak transcription	Duodenum Mucosa	Duodenum
46	chr12:120140000-120145800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr12:120140000-120146000	Weak transcription	GM12878-XiMat	blood
48	chr12:120140200-120148600	Weak transcription	Fetal Lung	lung
49	chr12:120140200-120149400	Weak transcription	Lung	lung
50	chr12:120141000-120159600	Strong transcription	Fetal Thymus	thymus

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