Variant report
| Variant | rs1542689 |
|---|---|
| Chromosome Location | chr11:106729918-106729919 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:106729646..106731875-chr11:106736556..106738444,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10890596 | 0.80[EUR][1000 genomes] |
| rs10890597 | 1.00[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs10890613 | 0.80[EUR][1000 genomes] |
| rs1487895 | 0.82[EUR][1000 genomes] |
| rs1574952 | 0.80[EUR][1000 genomes] |
| rs1601804 | 0.80[EUR][1000 genomes] |
| rs17106116 | 0.95[ASN][1000 genomes] |
| rs17106130 | 0.97[ASN][1000 genomes] |
| rs1940380 | 0.80[EUR][1000 genomes] |
| rs1940388 | 0.80[EUR][1000 genomes] |
| rs2029303 | 0.80[EUR][1000 genomes] |
| rs2171460 | 0.80[EUR][1000 genomes] |
| rs4754170 | 0.80[EUR][1000 genomes] |
| rs6588927 | 0.80[EUR][1000 genomes] |
| rs6588930 | 0.82[EUR][1000 genomes] |
| rs7933151 | 0.80[EUR][1000 genomes] |
| rs7935646 | 0.80[EUR][1000 genomes] |
| rs7944788 | 0.80[EUR][1000 genomes] |
| rs7951200 | 0.82[EUR][1000 genomes] |
| rs901777 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv898362 | chr11:106715879-106809457 | ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv1036990 | chr11:106718613-106774766 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv541162 | chr11:106718613-106774766 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:106719200-106730400 | Weak transcription | Fetal Lung | lung |
