Variant report

Variant	rs901777
Chromosome Location	chr11:106725623-106725624
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10458950	1.00[ASN][1000 genomes]
rs10458951	1.00[ASN][1000 genomes]
rs10749880	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10749884	1.00[ASN][1000 genomes]
rs10789551	1.00[ASN][1000 genomes]
rs10789556	1.00[ASN][1000 genomes]
rs10890596	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10890597	1.00[CEU][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10890599	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10890613	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10890623	1.00[ASN][1000 genomes]
rs10890627	1.00[ASN][1000 genomes]
rs11602032	1.00[ASN][1000 genomes]
rs1455602	1.00[ASN][1000 genomes]
rs1455603	1.00[ASN][1000 genomes]
rs1471043	1.00[ASN][1000 genomes]
rs1471044	1.00[ASN][1000 genomes]
rs1487895	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1531072	1.00[ASN][1000 genomes]
rs1542385	1.00[ASN][1000 genomes]
rs1542689	0.82[EUR][1000 genomes]
rs1574952	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1601804	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1824001	1.00[ASN][1000 genomes]
rs1940380	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1940381	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1940388	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1944207	1.00[ASN][1000 genomes]
rs2029302	0.86[EUR][1000 genomes]
rs2029303	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2171460	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2298508	1.00[CHB][hapmap]
rs2513107	1.00[ASN][1000 genomes]
rs4620687	1.00[ASN][1000 genomes]
rs4627041	1.00[ASN][1000 genomes]
rs4754170	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4754174	1.00[ASN][1000 genomes]
rs4754175	1.00[ASN][1000 genomes]
rs6588927	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6588930	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6588939	1.00[ASN][1000 genomes]
rs7115764	1.00[ASN][1000 genomes]
rs7119609	1.00[ASN][1000 genomes]
rs7933151	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7935646	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7936687	1.00[ASN][1000 genomes]
rs7939455	1.00[ASN][1000 genomes]
rs7944788	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7951200	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898362	chr11:106715879-106809457	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1036990	chr11:106718613-106774766	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv541162	chr11:106718613-106774766	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106719200-106730400	Weak transcription	Fetal Lung	lung
2	chr11:106724600-106726000	ZNF genes & repeats	Pancreas	Pancrea
3	chr11:106724800-106726000	ZNF genes & repeats	Fetal Intestine Small	intestine

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