Variant report
| Variant | rs1944207 |
|---|---|
| Chromosome Location | chr11:106798981-106798982 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10458950 | 1.00[ASN][1000 genomes] |
| rs10458951 | 1.00[ASN][1000 genomes] |
| rs10749880 | 1.00[ASN][1000 genomes] |
| rs10749884 | 1.00[ASN][1000 genomes] |
| rs10789551 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10789556 | 1.00[ASN][1000 genomes] |
| rs10890613 | 1.00[ASN][1000 genomes] |
| rs10890623 | 1.00[ASN][1000 genomes] |
| rs10890627 | 1.00[ASN][1000 genomes] |
| rs11602032 | 1.00[ASN][1000 genomes] |
| rs1455602 | 0.89[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1455603 | 1.00[ASN][1000 genomes] |
| rs1471043 | 1.00[ASN][1000 genomes] |
| rs1471044 | 1.00[ASN][1000 genomes] |
| rs1487895 | 1.00[ASN][1000 genomes] |
| rs1531072 | 1.00[ASN][1000 genomes] |
| rs1542385 | 1.00[ASN][1000 genomes] |
| rs1824001 | 1.00[ASN][1000 genomes] |
| rs2513107 | 1.00[ASN][1000 genomes] |
| rs4620687 | 1.00[ASN][1000 genomes] |
| rs4627041 | 1.00[ASN][1000 genomes] |
| rs4754174 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4754175 | 1.00[ASN][1000 genomes] |
| rs6588939 | 1.00[ASN][1000 genomes] |
| rs7115764 | 1.00[ASN][1000 genomes] |
| rs7119609 | 0.81[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7936687 | 0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7939455 | 1.00[ASN][1000 genomes] |
| rs7951200 | 1.00[ASN][1000 genomes] |
| rs901777 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv898362 | chr11:106715879-106809457 | ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv556231 | chr11:106737224-106815963 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv531938 | chr11:106760733-107156814 | Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv1818906 | chr11:106786428-106831384 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS | n/a | n/a | inside rSNPs | diseases |
| 5 | nsv976505 | chr11:106795037-106802899 | Weak transcription Enhancers ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:106786200-106806800 | Weak transcription | Fetal Lung | lung |
| 2 | chr11:106795000-106810600 | Weak transcription | Fetal Brain Male | brain |
| 3 | chr11:106797200-106799200 | Weak transcription | NHDF-Ad | bronchial |
