Variant report

Variant	rs10749884
Chromosome Location	chr11:106844849-106844850
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10458950	1.00[ASN][1000 genomes]
rs10458951	1.00[ASN][1000 genomes]
rs10749880	1.00[ASN][1000 genomes]
rs10789551	1.00[ASN][1000 genomes]
rs10789555	0.83[EUR][1000 genomes]
rs10789556	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10890613	1.00[ASN][1000 genomes]
rs10890623	1.00[ASN][1000 genomes]
rs10890627	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11602032	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1455602	1.00[ASN][1000 genomes]
rs1455603	1.00[ASN][1000 genomes]
rs1471043	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1471044	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1487895	1.00[ASN][1000 genomes]
rs1531072	1.00[ASN][1000 genomes]
rs1542385	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1824001	1.00[ASN][1000 genomes]
rs1944207	1.00[ASN][1000 genomes]
rs2513107	1.00[ASN][1000 genomes]
rs4620687	1.00[ASN][1000 genomes]
rs4627041	1.00[ASN][1000 genomes]
rs4754174	1.00[ASN][1000 genomes]
rs4754175	1.00[ASN][1000 genomes]
rs6588939	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115764	1.00[ASN][1000 genomes]
rs7119609	1.00[ASN][1000 genomes]
rs7936687	1.00[ASN][1000 genomes]
rs7939455	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7951200	1.00[ASN][1000 genomes]
rs901777	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10749884	ELMOD1	cis	brain	BrainEAC

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106828400-106857400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr11:106830800-106853600	Weak transcription	Fetal Muscle Leg	muscle
3	chr11:106832000-106851000	Weak transcription	Pancreas	Pancrea
4	chr11:106833400-106857800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:106840600-106853600	Weak transcription	Brain Anterior Caudate	brain
6	chr11:106840800-106845400	Weak transcription	Brain Angular Gyrus	brain
7	chr11:106840800-106845600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:106840800-106846200	Weak transcription	Ovary	ovary
9	chr11:106841000-106847400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:106841000-106848400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:106843200-106845200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:106843200-106848000	Enhancers	Fetal Heart	heart
13	chr11:106844200-106845200	Weak transcription	Dnd41	blood
14	chr11:106844200-106846400	Enhancers	Fetal Lung	lung
15	chr11:106844400-106845200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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