Variant report

Variant	rs1455602
Chromosome Location	chr11:106811908-106811909
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10458950	1.00[ASN][1000 genomes]
rs10458951	1.00[ASN][1000 genomes]
rs10736435	0.96[EUR][1000 genomes]
rs10749880	1.00[ASN][1000 genomes]
rs10749884	1.00[ASN][1000 genomes]
rs10789551	1.00[ASN][1000 genomes]
rs10789555	0.82[AMR][1000 genomes]
rs10789556	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10890597	0.85[YRI][hapmap]
rs10890613	1.00[ASN][1000 genomes]
rs10890623	1.00[ASN][1000 genomes]
rs10890627	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11602032	1.00[ASN][1000 genomes]
rs1455603	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1471043	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1471044	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1487895	1.00[ASN][1000 genomes]
rs1531072	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1542385	1.00[ASN][1000 genomes]
rs1824001	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1944207	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2513107	1.00[ASN][1000 genomes]
rs4620687	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4627041	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4754174	1.00[ASN][1000 genomes]
rs4754175	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6588939	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7115764	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7119609	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936687	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7939455	1.00[ASN][1000 genomes]
rs7951200	1.00[ASN][1000 genomes]
rs901777	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556231	chr11:106737224-106815963	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1818906	chr11:106786428-106831384	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1455602	CARD16	cis	cerebellum	SCAN
rs1455602	MMP1	cis	cerebellum	SCAN
rs1455602	GUCY1A2	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106807400-106826600	Weak transcription	Fetal Lung	lung
2	chr11:106808000-106812400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:106808000-106827800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr11:106809000-106830400	Weak transcription	Fetal Muscle Leg	muscle
5	chr11:106810600-106814600	Enhancers	Fetal Heart	heart
6	chr11:106811800-106812200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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