Variant report

Variant	rs1824001
Chromosome Location	chr11:106820522-106820523
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10458950	1.00[ASN][1000 genomes]
rs10458951	1.00[ASN][1000 genomes]
rs10749880	1.00[ASN][1000 genomes]
rs10749884	1.00[ASN][1000 genomes]
rs10789551	1.00[ASN][1000 genomes]
rs10789555	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10789556	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10890613	1.00[ASN][1000 genomes]
rs10890623	1.00[ASN][1000 genomes]
rs10890627	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11602032	1.00[ASN][1000 genomes]
rs1455602	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1455603	1.00[ASN][1000 genomes]
rs1471043	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1471044	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1487895	1.00[ASN][1000 genomes]
rs1531072	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542385	1.00[ASN][1000 genomes]
rs1944207	1.00[ASN][1000 genomes]
rs2513107	1.00[ASN][1000 genomes]
rs4620687	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4627041	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4754174	1.00[ASN][1000 genomes]
rs4754175	1.00[ASN][1000 genomes]
rs6588939	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119609	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7936687	1.00[ASN][1000 genomes]
rs7939455	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7951200	1.00[ASN][1000 genomes]
rs901777	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv1818906	chr11:106786428-106831384	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106807400-106826600	Weak transcription	Fetal Lung	lung
2	chr11:106808000-106827800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr11:106809000-106830400	Weak transcription	Fetal Muscle Leg	muscle
4	chr11:106815800-106821000	Weak transcription	Dnd41	blood
5	chr11:106819800-106821400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:106820000-106821400	Enhancers	NHEK	skin
7	chr11:106820000-106822200	Enhancers	Fetal Heart	heart
8	chr11:106820200-106821400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:106820400-106820600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr11:106820400-106821400	Enhancers	HMEC	breast

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