Variant report

Variant	rs1543265
Chromosome Location	chr7:147408493-147408494
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10952705	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1101045	0.84[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs11768363	0.92[CEU][hapmap];0.91[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12112619	0.97[ASN][1000 genomes]
rs12154840	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1404735	0.81[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs1404737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2373178	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4295581	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs700317	0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs851723	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1543265	ATG9B	cis	cerebellum	SCAN
rs1543265	ZNF777	cis	cerebellum	SCAN
rs1543265	SSPO	cis	parietal	SCAN
rs1543265	SMARCD3	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147407800-147408600	Enhancers	Primary hematopoietic stem cells	blood
2	chr7:147408400-147408800	Enhancers	Fetal Muscle Leg	muscle
3	chr7:147408400-147409200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:147408400-147409200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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