Variant report

Variant	rs700317
Chromosome Location	chr7:147407010-147407011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10952705	0.96[ASN][1000 genomes]
rs1101045	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs1101047	0.93[YRI][hapmap]
rs11768363	0.83[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.84[ASN][1000 genomes]
rs12112619	0.96[ASN][1000 genomes]
rs12154840	0.96[ASN][1000 genomes]
rs1404735	0.83[CHB][hapmap];0.92[JPT][hapmap];0.96[ASN][1000 genomes]
rs1404737	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1543265	0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2373178	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4295581	0.92[CHB][hapmap];0.92[JPT][hapmap];0.81[YRI][hapmap];0.94[ASN][1000 genomes]
rs700315	0.87[ASW][hapmap];0.86[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs851723	0.92[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.99[ASN][1000 genomes]
rs851725	0.84[AFR][1000 genomes]
rs851735	0.87[YRI][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs700317	SMARCD3	cis	cerebellum	SCAN
rs700317	ATG9B	cis	cerebellum	SCAN
rs700317	ZNF777	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147406200-147408400	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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