Variant report

Variant	rs1544994
Chromosome Location	chr3:115967545-115967546
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10934323	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10934324	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10934326	0.83[EUR][1000 genomes]
rs11719629	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12494106	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12496133	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12634800	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12695324	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13095238	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1381068	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1381070	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1431512	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1461121	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1461125	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1461126	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1549831	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1549832	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16824649	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16824686	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16824693	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16824696	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1870707	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1870708	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1870709	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1993732	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2163505	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2279109	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2306064	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2867101	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2867102	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2903483	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3195	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34500521	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4147304	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4831090	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4831126	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4831127	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4831128	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61254748	0.82[EUR][1000 genomes]
rs6438308	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6438310	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6765043	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6778040	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6805045	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73141002	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73143006	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73143010	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73861405	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7426468	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7431707	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7624352	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7637684	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7642172	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7645796	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7653282	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9826213	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9828943	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9830749	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9835427	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9836892	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9850908	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9866532	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9866706	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9875017	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877360	chr3:115916171-116023990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv1808373	chr3:115952799-115984473	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115958200-115969800	Weak transcription	Brain Angular Gyrus	brain
2	chr3:115961000-115971000	Weak transcription	Brain Anterior Caudate	brain
3	chr3:115962400-115983200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:115965400-115967600	Enhancers	Rectal Smooth Muscle	rectum
5	chr3:115965600-115970800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:115965800-115969800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:115965800-115969800	Weak transcription	Brain Substantia Nigra	brain
8	chr3:115965800-115970800	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:115965800-115983200	Weak transcription	Fetal Brain Male	brain
10	chr3:115967000-115972200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr3:115967400-115970800	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links