Variant report

Variant	rs13095238
Chromosome Location	chr3:115965911-115965912
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10934323	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10934324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10934326	0.82[EUR][1000 genomes]
rs11719629	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11920943	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs12492442	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs12494106	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12496133	1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12634800	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12695324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1381068	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1381070	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1431512	1.00[CEU][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1461121	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1461125	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1461126	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1544994	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1549831	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1549832	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16824649	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16824686	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16824691	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs16824693	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16824696	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16845196	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs1870707	0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1870708	1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1870709	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1993732	1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2163505	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2279109	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2306064	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2867101	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2867102	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2903483	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3195	0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34500521	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4147304	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4831090	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4831125	0.81[ASN][1000 genomes]
rs4831126	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4831127	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4831128	0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61254748	0.83[EUR][1000 genomes]
rs6438308	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6438310	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6765043	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6778040	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6805045	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73141002	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73143006	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73143010	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73861405	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7426468	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7431707	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7624352	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7637684	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7642172	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7645796	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7653282	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9289048	0.80[ASN][1000 genomes]
rs9826213	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9828943	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9830749	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9835427	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9836711	0.81[ASN][1000 genomes]
rs9836892	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9850908	0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9866532	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9866706	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9874470	0.81[ASN][1000 genomes]
rs9875017	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877360	chr3:115916171-116023990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv1808373	chr3:115952799-115984473	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115958200-115969800	Weak transcription	Brain Angular Gyrus	brain
2	chr3:115961000-115971000	Weak transcription	Brain Anterior Caudate	brain
3	chr3:115962400-115983200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:115963800-115966400	Weak transcription	Fetal Kidney	kidney
5	chr3:115965200-115966200	Enhancers	Fetal Brain Female	brain
6	chr3:115965400-115967600	Enhancers	Rectal Smooth Muscle	rectum
7	chr3:115965600-115966800	Enhancers	Colon Smooth Muscle	Colon
8	chr3:115965600-115970800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr3:115965800-115969800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr3:115965800-115969800	Weak transcription	Brain Substantia Nigra	brain
11	chr3:115965800-115970800	Weak transcription	Brain Hippocampus Middle	brain
12	chr3:115965800-115983200	Weak transcription	Fetal Brain Male	brain

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