Variant report

Variant	rs9289048
Chromosome Location	chr3:115968581-115968582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10934323	0.80[ASN][1000 genomes]
rs10934324	0.80[ASN][1000 genomes]
rs12695324	0.80[ASN][1000 genomes]
rs13095238	0.80[ASN][1000 genomes]
rs1381068	0.80[ASN][1000 genomes]
rs1381069	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1381070	0.80[ASN][1000 genomes]
rs1431512	0.80[ASN][1000 genomes]
rs1461121	0.81[ASN][1000 genomes]
rs1461124	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1461125	0.80[ASN][1000 genomes]
rs1461126	0.80[ASN][1000 genomes]
rs1870707	0.81[ASN][1000 genomes]
rs1870709	0.80[ASN][1000 genomes]
rs2163505	0.80[ASN][1000 genomes]
rs2279109	0.81[ASN][1000 genomes]
rs2867101	0.81[ASN][1000 genomes]
rs2867102	0.80[ASN][1000 genomes]
rs2903483	0.81[ASN][1000 genomes]
rs3195	0.81[ASN][1000 genomes]
rs4831125	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4831127	0.80[ASN][1000 genomes]
rs4831129	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.93[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.97[TSI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6438308	0.80[ASN][1000 genomes]
rs6765043	0.80[ASN][1000 genomes]
rs6778040	0.80[ASN][1000 genomes]
rs6805045	0.80[ASN][1000 genomes]
rs7426468	0.81[ASN][1000 genomes]
rs7624352	0.80[ASN][1000 genomes]
rs7637684	0.81[ASN][1000 genomes]
rs7642172	0.81[ASN][1000 genomes]
rs7653282	0.80[ASN][1000 genomes]
rs9830749	0.81[ASN][1000 genomes]
rs9835427	0.80[ASN][1000 genomes]
rs9850908	0.81[ASN][1000 genomes]
rs9874470	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.82[MEX][hapmap];0.96[MKK][hapmap];0.92[TSI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9875017	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877360	chr3:115916171-116023990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv1808373	chr3:115952799-115984473	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115958200-115969800	Weak transcription	Brain Angular Gyrus	brain
2	chr3:115961000-115971000	Weak transcription	Brain Anterior Caudate	brain
3	chr3:115962400-115983200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:115965600-115970800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr3:115965800-115969800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:115965800-115969800	Weak transcription	Brain Substantia Nigra	brain
7	chr3:115965800-115970800	Weak transcription	Brain Hippocampus Middle	brain
8	chr3:115965800-115983200	Weak transcription	Fetal Brain Male	brain
9	chr3:115967000-115972200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr3:115967400-115970800	Weak transcription	Colon Smooth Muscle	Colon
11	chr3:115967600-115969400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr3:115968400-115971000	Weak transcription	Fetal Kidney	kidney

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