Variant report

Variant	rs1381069
Chromosome Location	chr3:115983248-115983249
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12494106	0.80[ASN][1000 genomes]
rs12634800	0.82[ASN][1000 genomes]
rs1461124	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1549832	0.81[ASN][1000 genomes]
rs16824649	0.81[CHB][hapmap]
rs1870707	0.81[CHB][hapmap]
rs3195	0.81[CHB][hapmap]
rs4831090	0.81[ASN][1000 genomes]
rs4831125	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4831129	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73141002	0.81[ASN][1000 genomes]
rs9289048	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9836892	0.81[CHB][hapmap]
rs9874470	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877360	chr3:115916171-116023990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv1808373	chr3:115952799-115984473	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115971200-115984800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:115973000-115983800	Weak transcription	Brain Hippocampus Middle	brain
3	chr3:115976000-115987000	Weak transcription	Brain Anterior Caudate	brain
4	chr3:115976200-115984000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr3:115976200-115987000	Weak transcription	Brain Angular Gyrus	brain
6	chr3:115978400-115983800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr3:115979800-115985000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:115980400-115983400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:115982000-115987200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:115982600-115983400	Enhancers	Rectal Smooth Muscle	rectum
11	chr3:115982600-115983800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:115982600-115985600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:115982800-115983600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr3:115982800-115984600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:115982800-115985400	Enhancers	Fetal Lung	lung
16	chr3:115983000-115983600	Enhancers	Colon Smooth Muscle	Colon
17	chr3:115983000-115985400	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr3:115983000-115985600	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr3:115983200-115983400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr3:115983200-115983400	Enhancers	Fetal Brain Male	brain
21	chr3:115983200-115983600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr3:115983200-115983600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr3:115983200-115985200	Enhancers	Brain Germinal Matrix	brain
24	chr3:115983200-115985400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr3:115983200-115985400	Enhancers	Fetal Stomach	stomach
26	chr3:115983200-115986400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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