Variant report

Variant	rs4831129
Chromosome Location	chr3:115981443-115981444
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10934324	0.80[CHD][hapmap]
rs12494106	0.80[ASN][1000 genomes]
rs12634800	0.87[CHD][hapmap];0.82[ASN][1000 genomes]
rs1381069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1461124	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1549832	0.81[ASN][1000 genomes]
rs1870709	0.80[CHD][hapmap]
rs2279109	0.80[CHD][hapmap]
rs4831090	0.87[CHD][hapmap];0.81[ASN][1000 genomes]
rs4831125	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6438308	0.80[CHD][hapmap]
rs6778040	0.80[CHD][hapmap]
rs73141002	0.81[ASN][1000 genomes]
rs7637684	0.80[CHD][hapmap]
rs7642172	0.80[CHD][hapmap]
rs9289048	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.93[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.97[TSI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9830749	0.80[CHD][hapmap]
rs9866706	0.80[CHD][hapmap]
rs9874470	1.00[CHB][hapmap];0.93[CHD][hapmap];0.93[JPT][hapmap];0.82[MEX][hapmap];0.93[MKK][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877360	chr3:115916171-116023990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv1808373	chr3:115952799-115984473	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3448669	chr3:115979812-115982210	Bivalent Enhancer Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115962400-115983200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:115965800-115983200	Weak transcription	Fetal Brain Male	brain
3	chr3:115971200-115984800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:115973000-115983800	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:115976000-115987000	Weak transcription	Brain Anterior Caudate	brain
6	chr3:115976200-115982800	Weak transcription	Fetal Lung	lung
7	chr3:115976200-115984000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:115976200-115987000	Weak transcription	Brain Angular Gyrus	brain
9	chr3:115976800-115982600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:115977800-115981600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
11	chr3:115977800-115981800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
12	chr3:115978000-115982600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:115978400-115983800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr3:115978600-115982000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
15	chr3:115979800-115985000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr3:115980400-115983400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr3:115980800-115981800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
18	chr3:115980800-115982600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:115981000-115981800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
20	chr3:115981000-115982200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
21	chr3:115981400-115981800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
22	chr3:115981400-115981800	Enhancers	Rectal Smooth Muscle	rectum
23	chr3:115981400-115982000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:115981400-115982000	Enhancers	Colon Smooth Muscle	Colon
25	chr3:115981400-115982200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell

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