Variant report

Variant	rs1461124
Chromosome Location	chr3:115982415-115982416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1381069	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4831125	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4831129	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7431707	0.82[AMR][1000 genomes]
rs9289048	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9874470	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877360	chr3:115916171-116023990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv1808373	chr3:115952799-115984473	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115962400-115983200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:115965800-115983200	Weak transcription	Fetal Brain Male	brain
3	chr3:115971200-115984800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:115973000-115983800	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:115976000-115987000	Weak transcription	Brain Anterior Caudate	brain
6	chr3:115976200-115982800	Weak transcription	Fetal Lung	lung
7	chr3:115976200-115984000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:115976200-115987000	Weak transcription	Brain Angular Gyrus	brain
9	chr3:115976800-115982600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:115978000-115982600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:115978400-115983800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr3:115979800-115985000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr3:115980400-115983400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr3:115980800-115982600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:115981800-115982600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr3:115982000-115983000	Weak transcription	Colon Smooth Muscle	Colon
17	chr3:115982000-115987200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links