Variant report

Variant	rs61254748
Chromosome Location	chr3:115985598-115985599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10934323	0.82[EUR][1000 genomes]
rs10934324	0.82[EUR][1000 genomes]
rs10934326	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12494106	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12496133	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12634800	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12695324	0.83[EUR][1000 genomes]
rs13095238	0.83[EUR][1000 genomes]
rs1381068	0.84[EUR][1000 genomes]
rs1381070	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1431512	0.84[EUR][1000 genomes]
rs1461121	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1461125	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1461126	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1544994	0.82[EUR][1000 genomes]
rs1549831	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1549832	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16824649	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16824686	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824693	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16824696	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1870707	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1870708	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1870709	0.83[EUR][1000 genomes]
rs1993732	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2163505	0.84[EUR][1000 genomes]
rs2279109	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2306064	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2867101	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2867102	0.82[EUR][1000 genomes]
rs2903483	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3195	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34500521	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4147304	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4831090	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4831126	0.83[EUR][1000 genomes]
rs4831127	0.83[EUR][1000 genomes]
rs4831128	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6438308	0.83[EUR][1000 genomes]
rs6438310	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6765043	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73141002	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73143006	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73143010	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73861405	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7426468	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7431707	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7624352	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7637684	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7642172	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7645796	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9826213	0.82[EUR][1000 genomes]
rs9828943	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9830749	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9835427	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9836711	0.81[EUR][1000 genomes]
rs9836892	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9850908	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9866532	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9866706	0.83[EUR][1000 genomes]
rs9875017	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877360	chr3:115916171-116023990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115976000-115987000	Weak transcription	Brain Anterior Caudate	brain
2	chr3:115976200-115987000	Weak transcription	Brain Angular Gyrus	brain
3	chr3:115982000-115987200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:115982600-115985600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:115983000-115985600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:115983200-115986400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:115984600-115987200	Weak transcription	Brain Hippocampus Middle	brain
8	chr3:115984600-115989800	Weak transcription	Brain Substantia Nigra	brain
9	chr3:115984800-115986000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:115985200-115986200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:115985200-115994600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr3:115985400-115985800	Weak transcription	Colon Smooth Muscle	Colon
13	chr3:115985400-115986800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr3:115985400-115987200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:115985400-115987800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr3:115985400-115989200	Weak transcription	Fetal Lung	lung
17	chr3:115985400-115989400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr3:115985400-115992200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr3:115985400-115999600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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