Variant report

Variant	rs1545626
Chromosome Location	chr1:150976213-150976214
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr1:150976196-150976301	HepG2	liver:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:150975371..150978821-chr1:151041337..151043536,3	K562	blood:
2	chr1:150974834..150982774-chr1:151014282..151023779,19	MCF-7	breast:
3	chr1:150976003..150979092-chr1:151029150..151032179,4	K562	blood:
4	chr1:150896490..150900327-chr1:150972734..150976492,4	K562	blood:
5	chr1:150975630..150977223-chr1:151040734..151043110,2	MCF-7	breast:
6	chr1:150950114..150952556-chr1:150975284..150977893,2	K562	blood:
7	chr1:150944222..150949507-chr1:150975860..150982521,8	K562	blood:

No data

Variant related genes	Relation type
PRUNE	TF binding region
ENSG00000143379	Chromatin interaction
ENSG00000163141	Chromatin interaction
ENSG00000231073	Chromatin interaction
ENSG00000143443	Chromatin interaction
ENSG00000143418	Chromatin interaction
ENSG00000143458	Chromatin interaction
ENSG00000197622	Chromatin interaction
ENSG00000213190	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1545625	1.00[AMR][1000 genomes]
rs2925741	1.00[MEX][hapmap];0.93[MKK][hapmap];0.83[AMR][1000 genomes]
rs3002293	0.89[ASW][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[AMR][1000 genomes]
rs771197	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.90[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs771199	1.00[MEX][hapmap];0.93[MKK][hapmap];0.83[AMR][1000 genomes]
rs771202	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv522840	chr1:150933723-151347746	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv916272	chr1:150961809-151557253	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150955400-150978800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:150961800-150978200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:150967600-150978000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:150968200-150977400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:150968400-150978000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr1:150968400-150978000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr1:150968400-150978000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr1:150968600-150977400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr1:150968600-150977400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr1:150968600-150977400	Weak transcription	NHDF-Ad	bronchial
11	chr1:150968600-150978000	Weak transcription	A549	lung
12	chr1:150970000-150978400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:150970400-150978000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr1:150970600-150976800	Weak transcription	HMEC	breast
15	chr1:150970800-150978200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr1:150971000-150976800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:150972000-150977400	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr1:150972000-150978200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr1:150972000-150978400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr1:150972200-150978000	Enhancers	K562	blood
21	chr1:150972400-150978000	Weak transcription	Aorta	Aorta
22	chr1:150972600-150977400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr1:150972800-150978000	Weak transcription	HUVEC	blood vessel
24	chr1:150973000-150978000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr1:150973000-150978000	Weak transcription	HSMM	muscle
26	chr1:150973000-150978000	Weak transcription	HSMMtube	muscle
27	chr1:150973200-150977400	Weak transcription	Osteobl	bone
28	chr1:150973600-150980800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
29	chr1:150973800-150976800	Enhancers	Stomach Mucosa	stomach
30	chr1:150973800-150979000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
31	chr1:150974000-150977400	Enhancers	Spleen	Spleen
32	chr1:150974000-150978200	Enhancers	Fetal Thymus	thymus
33	chr1:150974200-150977400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr1:150974400-150977400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr1:150974600-150978400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr1:150974800-150976400	Flanking Active TSS	Primary T cells from cord blood	blood
37	chr1:150974800-150976400	Enhancers	Ovary	ovary
38	chr1:150974800-150976800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr1:150974800-150976800	Flanking Active TSS	Primary B cells from cord blood	blood
40	chr1:150974800-150977400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr1:150974800-150977400	Enhancers	Adipose Nuclei	Adipose
42	chr1:150974800-150979000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
43	chr1:150975000-150976600	Weak transcription	NHEK	skin
44	chr1:150975000-150976800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr1:150975000-150977000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
46	chr1:150975000-150977400	Enhancers	Left Ventricle	heart
47	chr1:150975000-150978400	Enhancers	Placenta	Placenta
48	chr1:150975200-150976800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr1:150975200-150976800	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr1:150975200-150976800	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links