Variant report

Variant	rs771202
Chromosome Location	chr1:150969567-150969568
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:150938225..150939767-chr1:150968259..150969820,2	K562	blood:
2	chr1:150937219..150939370-chr1:150968361..150970746,2	MCF-7	breast:
3	chr1:150944409..150948293-chr1:150968315..150970666,3	MCF-7	breast:
4	chr1:150967937..150969769-chr1:150986462..150989877,3	K562	blood:
5	chr1:150951645..150956254-chr1:150963775..150970753,11	MCF-7	breast:
6	chr1:150948646..150951124-chr1:150967629..150969757,2	K562	blood:
7	chr1:150964621..150967260-chr1:150968064..150969856,2	MCF-7	breast:
8	chr1:150967045..150969733-chr1:151032331..151034733,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000143418	Chromatin interaction
ENSG00000259357	Chromatin interaction
ENSG00000143412	Chromatin interaction
ENSG00000231073	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1545625	0.83[AMR][1000 genomes]
rs1545626	0.83[AMR][1000 genomes]
rs2925741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3002293	0.83[AMR][1000 genomes]
rs771197	0.83[AMR][1000 genomes]
rs771199	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv1008496	chr1:150845827-150970656	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
4	nsv522317	chr1:150933723-150974162	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
5	nsv522840	chr1:150933723-151347746	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
6	nsv916272	chr1:150961809-151557253	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150955400-150970400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:150955400-150978800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:150961400-150969600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr1:150961800-150978200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:150963800-150969600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr1:150965800-150969600	Weak transcription	Primary B cells from cord blood	blood
7	chr1:150965800-150970200	Weak transcription	HMEC	breast
8	chr1:150966600-150971400	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr1:150967000-150971400	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr1:150967400-150973600	Strong transcription	Primary T cells from cord blood	blood
11	chr1:150967600-150970000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr1:150967600-150971200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr1:150967600-150971400	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr1:150967600-150973600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr1:150967600-150974200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr1:150967600-150975200	Strong transcription	Fetal Intestine Small	intestine
17	chr1:150967600-150975600	Strong transcription	Fetal Stomach	stomach
18	chr1:150967600-150978000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr1:150968000-150969600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr1:150968000-150975200	Weak transcription	Small Intestine	intestine
21	chr1:150968200-150977400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr1:150968400-150969600	Weak transcription	Colon Smooth Muscle	Colon
23	chr1:150968400-150970400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr1:150968400-150971200	Weak transcription	HSMM	muscle
25	chr1:150968400-150971400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr1:150968400-150971400	Weak transcription	HSMMtube	muscle
27	chr1:150968400-150973400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr1:150968400-150974200	Strong transcription	Pancreas	Pancrea
29	chr1:150968400-150974200	Weak transcription	Right Atrium	heart
30	chr1:150968400-150974200	Weak transcription	Thymus	Thymus
31	chr1:150968400-150975200	Weak transcription	Hela-S3	cervix
32	chr1:150968400-150978000	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr1:150968400-150978000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr1:150968400-150978000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr1:150968600-150969600	Weak transcription	Brain Angular Gyrus	brain
36	chr1:150968600-150969800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr1:150968600-150969800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr1:150968600-150969800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr1:150968600-150970400	Weak transcription	Stomach Mucosa	stomach
40	chr1:150968600-150970400	Weak transcription	NHEK	skin
41	chr1:150968600-150971200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr1:150968600-150971200	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr1:150968600-150971200	Weak transcription	HepG2	liver
44	chr1:150968600-150971200	Weak transcription	K562	blood
45	chr1:150968600-150971400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr1:150968600-150971400	Weak transcription	HUVEC	blood vessel
47	chr1:150968600-150971600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr1:150968600-150971600	Weak transcription	Fetal Kidney	kidney
49	chr1:150968600-150971600	Weak transcription	Fetal Thymus	thymus
50	chr1:150968600-150972000	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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