Variant report

Variant	rs771197
Chromosome Location	chr1:150981620-150981621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:104)
CpG islands
(count:0)
Chromatin interactive
region (count:31)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:104 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF1	chr1:150981373-150981700	K562	blood:	n/a	n/a
2	SMARCB1	chr1:150980753-150981650	Hela-S3	cervix:	n/a	n/a
3	SIN3AK20	chr1:150980180-150981912	MCF-7	breast:	n/a	n/a
4	POLR2A	chr1:150980583-150981653	HEK293	kidney:	n/a	n/a
5	FOXA2	chr1:150981396-150981671	HepG2	liver:	n/a	n/a
6	MAFK	chr1:150981568-150982063	IMR90	lung:	n/a	n/a
7	ZBTB7A	chr1:150981371-150981639	K562	blood:	n/a	n/a
8	MAX	chr1:150981380-150981801	HepG2	liver:	n/a	n/a
9	UBTF	chr1:150980768-150982401	K562	blood:	n/a	n/a
10	POLR2A	chr1:150980409-150981886	HepG2	liver:	n/a	n/a
11	MYC	chr1:150981273-150981645	MCF10A-Er-Src	breast:	n/a	n/a
12	MAZ	chr1:150980671-150981634	Hela-S3	cervix:	n/a	chr1:150980818-150980827
13	CHD1	chr1:150980641-150981688	GM12878	blood:	n/a	chr1:150981521-150981531
14	POLR2A	chr1:150980690-150981685	Hela-S3	cervix:	n/a	n/a
15	POLR2A	chr1:150980814-150981676	Hela-S3	cervix:	n/a	n/a
16	MAX	chr1:150980685-150981783	NB4	blood:	n/a	chr1:150980818-150980827
17	EGR1	chr1:150981470-150981674	K562	blood:	n/a	n/a
18	MAX	chr1:150980416-150981866	MCF-7	breast:	n/a	chr1:150980818-150980827
19	MAX	chr1:150980468-150981748	A549	lung:	n/a	chr1:150980818-150980827
20	MAX	chr1:150980605-150981717	ECC-1	luminal epithelium:	n/a	chr1:150980818-150980827
21	MAX	chr1:150980603-150981752	Hela-S3	cervix:	n/a	chr1:150980818-150980827
22	ETS1	chr1:150981299-150981626	K562	blood:	n/a	n/a
23	HCFC1	chr1:150980019-150982095	Hela-S3	cervix:	n/a	n/a
24	GABPA	chr1:150980256-150981937	MCF-7	breast:	n/a	n/a
25	IRF1	chr1:150981602-150981785	K562	blood:	n/a	n/a
26	POLR2A	chr1:150980534-150981670	K562	blood:	n/a	n/a
27	POLR2A	chr1:150981368-150981670	Hela-S3	cervix:	n/a	n/a
28	POLR2A	chr1:150981324-150981715	HepG2	liver:	n/a	n/a
29	MXI1	chr1:150980478-150981897	HepG2	liver:	n/a	n/a
30	SIN3AK20	chr1:150978184-150981996	MCF-7	breast:	n/a	n/a
31	KAP1	chr1:150980582-150981981	U2OS	brain:	n/a	n/a
32	POLR2A	chr1:150980622-150981709	K562	blood:	n/a	n/a
33	POLR2A	chr1:150980691-150981698	K562	blood:	n/a	n/a
34	POLR2A	chr1:150981472-150981671	HUVEC	blood vessel:	n/a	n/a
35	MXI1	chr1:150980226-150982457	IMR90	lung:	n/a	n/a
36	POLR2A	chr1:150980476-150981737	SK-N-MC	brain:	n/a	n/a
37	SIN3A	chr1:150980479-150981961	H1-hESC	embryonic stem cell:	n/a	n/a
38	GTF2B	chr1:150981352-150981911	K562	blood:	n/a	n/a
39	HA-E2F1	chr1:150980608-150981820	MCF-7	breast:	n/a	chr1:150980880-150980889
40	SMC3	chr1:150980483-150981693	Hela-S3	cervix:	n/a	n/a
41	EGR1	chr1:150981439-150981728	K562	blood:	n/a	n/a
42	MAX	chr1:150981366-150981654	K562	blood:	n/a	n/a
43	YY1	chr1:150980706-150981678	HepG2	liver:	n/a	chr1:150980883-150980892
44	POLR2A	chr1:150978695-150981793	HepG2	liver:	n/a	n/a
45	GATA3	chr1:150980271-150981731	MCF-7	breast:	n/a	chr1:150981621-150981631 chr1:150980550-150980559
46	MAZ	chr1:150980621-150981730	K562	blood:	n/a	chr1:150980818-150980827
47	GABPA	chr1:150980386-150981843	MCF-7	breast:	n/a	n/a
48	JUND	chr1:150981418-150981724	K562	blood:	n/a	chr1:150981466-150981480
49	POLR2A	chr1:150980623-150981638	ECC-1	luminal epithelium:	n/a	n/a
50	MAX	chr1:150980571-150981754	K562	blood:	n/a	chr1:150980818-150980827

No data

(count:31 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:150945812..150948969-chr1:150979293..150982183,4	K562	blood:
2	chr1:150980774..150986118-chr1:151028117..151032528,6	MCF-7	breast:
3	chr1:150974834..150982774-chr1:151014282..151023779,19	MCF-7	breast:
4	chr1:150849097..150850809-chr1:150979255..150981896,2	MCF-7	breast:
5	chr1:150550535..150554049-chr1:150976755..150981799,6	K562	blood:
6	chr1:150532436..150535638-chr1:150978193..150982152,3	MCF-7	breast:
7	chr1:150981488..150983743-chr1:150994287..150997162,2	K562	blood:
8	chr1:150980411..150982537-chr1:151106245..151107794,2	K562	blood:
9	chr1:150979291..150984938-chr1:151030285..151033653,10	K562	blood:
10	chr1:150979986..150982538-chr1:151136841..151139170,3	K562	blood:
11	chr1:150980779..150982400-chr1:151127994..151130267,2	MCF-7	breast:
12	chr1:150981570..150984022-chr1:151030285..151033329,3	K562	blood:
13	chr1:150981060..150985373-chr1:151041559..151045283,5	MCF-7	breast:
14	chr1:150944222..150949507-chr1:150975860..150982521,8	K562	blood:
15	chr1:150334947..150337371-chr1:150979446..150982037,2	K562	blood:
16	chr1:150976577..150980080-chr1:150980788..150983027,4	MCF-7	breast:
17	chr1:150980802..150982666-chr1:150995777..150997822,2	MCF-7	breast:
18	chr1:150951620..150955085-chr1:150979651..150983018,4	K562	blood:
19	chr1:150979416..150982558-chr1:151006468..151010604,5	MCF-7	breast:
20	chr1:150942078..150949693-chr1:150976791..150984782,24	MCF-7	breast:
21	chr1:150981455..150983585-chr1:150990111..150992400,2	MCF-7	breast:
22	chr1:150952182..150958148-chr1:150976816..150982947,12	MCF-7	breast:
23	chr1:150978947..150982308-chr1:151041500..151045951,4	K562	blood:
24	chr1:150977392..150983338-chr1:151040807..151046211,16	MCF-7	breast:
25	chr1:150979239..150982026-chr1:151136822..151140051,3	MCF-7	breast:
26	chr1:150976723..150987587-chr1:151024685..151036322,24	MCF-7	breast:
27	chr1:150981041..150981622-chr20:52246490..52247233,2	MCF-7	breast:
28	chr1:150939149..150940667-chr1:150979140..150981857,2	MCF-7	breast:
29	chr1:150979769..150983967-chr1:151018069..151024059,8	MCF-7	breast:
30	chr1:150981579..150983515-chr1:150988748..150990453,2	MCF-7	breast:
31	chr1:150979682..150982247-chr1:150996495..150999456,2	MCF-7	breast:

No data

Variant related genes	Relation type
FAM63A	TF binding region
ENSG00000213190	Chromatin interaction
ENSG00000143384	Chromatin interaction
ENSG00000143443	Chromatin interaction
ENSG00000143437	Chromatin interaction
ENSG00000203804	Chromatin interaction
ENSG00000143418	Chromatin interaction
ENSG00000163155	Chromatin interaction
ENSG00000143409	Chromatin interaction
ENSG00000143434	Chromatin interaction
ENSG00000163156	Chromatin interaction
ENSG00000143412	Chromatin interaction
ENSG00000163154	Chromatin interaction
ENSG00000163125	Chromatin interaction
ENSG00000197622	Chromatin interaction
ENSG00000200759	Chromatin interaction
ENSG00000163141	Chromatin interaction
ENSG00000231073	Chromatin interaction
ENSG00000143458	Chromatin interaction
ENSG00000143363	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1545625	1.00[AMR][1000 genomes]
rs1545626	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.90[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2925741	1.00[MEX][hapmap];0.89[MKK][hapmap];0.83[AMR][1000 genomes]
rs3002293	0.89[ASW][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs771199	1.00[MEX][hapmap];0.89[MKK][hapmap];0.83[AMR][1000 genomes]
rs771202	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv522840	chr1:150933723-151347746	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv916272	chr1:150961809-151557253	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150975400-150982400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr1:150977400-150981800	Active TSS	Esophagus	oesophagus
3	chr1:150978800-150981800	Active TSS	HSMMtube	muscle
4	chr1:150980000-150982000	Flanking Active TSS	Primary hematopoietic stem cells	blood
5	chr1:150980200-150982000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr1:150980200-150982000	Flanking Active TSS	Fetal Muscle Leg	muscle
7	chr1:150980200-150982400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:150980400-150981800	Active TSS	H1 Cell Line	embryonic stem cell
9	chr1:150980400-150981800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
10	chr1:150980400-150981800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
11	chr1:150980400-150981800	Active TSS	Aorta	Aorta
12	chr1:150980400-150981800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr1:150980400-150981800	Active TSS	Colonic Mucosa	Colon
14	chr1:150980400-150981800	Active TSS	Psoas Muscle	Psoas
15	chr1:150980400-150981800	Active TSS	NHLF	lung
16	chr1:150980400-150982000	Active TSS	H9 Cell Line	embryonic stem cell
17	chr1:150980400-150982400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
18	chr1:150980600-150981800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr1:150980600-150981800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr1:150980600-150981800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr1:150980600-150981800	Active TSS	Breast Myoepithelial Primary Cells	Breast
22	chr1:150980600-150981800	Active TSS	Brain Angular Gyrus	brain
23	chr1:150980600-150981800	Active TSS	Fetal Intestine Large	intestine
24	chr1:150980600-150982000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr1:150980600-150982000	Flanking Active TSS	Fetal Muscle Trunk	muscle
26	chr1:150980600-150982000	Active TSS	Right Ventricle	heart
27	chr1:150980600-150982200	Active TSS	ES-I3 Cell Line	embryonic stem cell
28	chr1:150980600-150982200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr1:150980800-150981800	Active TSS	HUES48 Cell Line	embryonic stem cell
30	chr1:150980800-150981800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr1:150980800-150981800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr1:150980800-150981800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr1:150980800-150981800	Active TSS	Fetal Heart	heart
34	chr1:150980800-150981800	Active TSS	Fetal Lung	lung
35	chr1:150980800-150981800	Active TSS	Left Ventricle	heart
36	chr1:150980800-150981800	Active TSS	Pancreas	Pancrea
37	chr1:150980800-150981800	Active TSS	Placenta Amnion	Placenta Amnion
38	chr1:150980800-150981800	Active TSS	K562	blood
39	chr1:150980800-150982000	Active TSS	HUES64 Cell Line	embryonic stem cell
40	chr1:150980800-150982200	Active TSS	Pancreatic Islets	Pancreatic Islet
41	chr1:150980800-150982400	Active TSS	Rectal Smooth Muscle	rectum
42	chr1:150981000-150981800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr1:150981000-150981800	Active TSS	Lung	lung
44	chr1:150981000-150981800	Active TSS	Ovary	ovary
45	chr1:150981000-150981800	Active TSS	Small Intestine	intestine
46	chr1:150981000-150982000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
47	chr1:150981000-150982000	Flanking Active TSS	Fetal Thymus	thymus
48	chr1:150981000-150982400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr1:150981200-150981800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr1:150981200-150981800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links