Variant report

Variant	rs154632
Chromosome Location	chr5:118769298-118769299
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:118753173..118755307-chr5:118768998..118771173,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10077888	0.82[CHB][hapmap];0.83[GIH][hapmap]
rs10478422	0.91[CHB][hapmap];0.90[GIH][hapmap];0.92[MEX][hapmap];0.81[TSI][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10478424	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs11205	1.00[CHB][hapmap];0.98[CHD][hapmap];0.85[JPT][hapmap]
rs11241507	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1155777	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs11949608	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs1490756	0.95[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap]
rs1509144	0.82[CHB][hapmap]
rs150938	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs165995	0.95[CHB][hapmap]
rs17145464	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs1848554	0.95[CHB][hapmap];0.83[GIH][hapmap];0.87[MEX][hapmap]
rs193346	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1995794	0.84[CEU][hapmap];0.91[CHB][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2455466	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2455467	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2457222	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs257969	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]
rs257985	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs258047	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs258050	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs258051	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2914210	1.00[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap]
rs32643	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs32644	0.87[ASN][1000 genomes]
rs32645	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs32646	0.93[ASN][1000 genomes]
rs32649	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3797368	1.00[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];0.90[JPT][hapmap]
rs3797372	1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap]
rs3822527	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs39969	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs455991	0.86[CHB][hapmap];0.80[JPT][hapmap];0.82[EUR][1000 genomes]
rs6897978	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs7716785	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7721752	0.91[CHB][hapmap];0.90[GIH][hapmap];0.92[MEX][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs924623	0.87[CHB][hapmap];0.80[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030717	chr5:118709310-118836951	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427732	chr5:118730999-119034741	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv4974	chr5:118750259-118795376	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118763800-118773000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:118765000-118770800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:118767400-118769400	Weak transcription	Primary B cells from peripheral blood	blood

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