Variant report

Variant	rs32646
Chromosome Location	chr5:118782730-118782731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10077888	0.82[CHB][hapmap]
rs10478422	0.91[CHB][hapmap]
rs10478424	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs11205	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs11241507	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1155777	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs11949608	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs1490756	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs1509144	0.83[CHB][hapmap]
rs150938	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs154632	0.93[ASN][1000 genomes]
rs165995	0.95[CHB][hapmap]
rs17145464	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs1848554	0.95[CHB][hapmap]
rs193346	0.84[ASN][1000 genomes]
rs1995794	0.91[CHB][hapmap]
rs2451815	0.82[ASN][1000 genomes]
rs2455466	0.84[ASN][1000 genomes]
rs2455467	0.84[ASN][1000 genomes]
rs2457222	0.84[ASN][1000 genomes]
rs257969	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs257979	0.82[ASN][1000 genomes]
rs257983	0.83[ASN][1000 genomes]
rs257985	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs258047	0.82[ASN][1000 genomes]
rs258050	0.82[ASN][1000 genomes]
rs258051	0.82[ASN][1000 genomes]
rs2914210	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs32643	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs32644	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs32645	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs32649	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3797368	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs3797372	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs3822527	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs39969	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs455991	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs6897978	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs7716785	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7721752	0.91[CHB][hapmap]
rs924623	0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030717	chr5:118709310-118836951	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427732	chr5:118730999-119034741	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv4974	chr5:118750259-118795376	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1024455	chr5:118770429-119487982	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118775400-118787600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr5:118781400-118782800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:118781600-118782800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr5:118781600-118785400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:118781600-118788000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:118782400-118787400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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