Variant report

Variant	rs2455466
Chromosome Location	chr5:118762025-118762026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:118760077..118762768-chr5:118762980..118764985,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10077888	0.82[CHB][hapmap];0.85[EUR][1000 genomes]
rs1047322	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10478421	0.85[ASN][1000 genomes]
rs10478422	0.87[CEU][hapmap];0.91[CHB][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1105769	0.84[EUR][1000 genomes]
rs1105770	0.83[EUR][1000 genomes]
rs11205	0.91[CHB][hapmap]
rs11241507	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs1155777	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs11949608	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs1490756	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1509144	0.87[CEU][hapmap];0.83[CHB][hapmap];0.85[EUR][1000 genomes]
rs150938	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs154632	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs165995	0.90[CHB][hapmap]
rs17145464	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1848554	0.83[CEU][hapmap];0.86[CHB][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs193346	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1995794	0.92[CEU][hapmap];0.91[CHB][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2455467	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2457222	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs257969	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs257985	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs258047	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs258050	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs258051	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2914210	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs32643	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs32644	0.83[ASN][1000 genomes]
rs32645	0.85[ASN][1000 genomes]
rs32646	0.84[ASN][1000 genomes]
rs32649	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3733855	0.81[AMR][1000 genomes]
rs3797368	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs3797372	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs3822527	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs39969	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs455991	0.87[CEU][hapmap];0.96[CHB][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6888436	0.82[AMR][1000 genomes]
rs6888463	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6893184	0.84[EUR][1000 genomes]
rs7716785	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs7721752	0.83[CEU][hapmap];0.91[CHB][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030717	chr5:118709310-118836951	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427732	chr5:118730999-119034741	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv965533	chr5:118738884-118762384	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv4974	chr5:118750259-118795376	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118753800-118762800	Weak transcription	Colon Smooth Muscle	Colon
2	chr5:118754800-118762200	Weak transcription	K562	blood
3	chr5:118756200-118762200	Weak transcription	Stomach Mucosa	stomach
4	chr5:118756800-118762400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:118756800-118762800	Weak transcription	Placenta	Placenta
6	chr5:118759400-118762200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:118761400-118763200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr5:118761400-118765000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr5:118761600-118762600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:118761600-118764000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr5:118761800-118763400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr5:118761800-118764400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:118761800-118764600	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr5:118761800-118764800	Enhancers	Primary B cells from peripheral blood	blood
15	chr5:118762000-118762200	Enhancers	Adipose Nuclei	Adipose
16	chr5:118762000-118763800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:118762000-118764200	Enhancers	Primary B cells from cord blood	blood

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