Variant report

Variant	rs1546576
Chromosome Location	chr4:28515678-28515679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10026977	1.00[AMR][1000 genomes]
rs12642509	1.00[AMR][1000 genomes]
rs12647483	1.00[AMR][1000 genomes]
rs1399126	1.00[AMR][1000 genomes]
rs1399127	1.00[AMR][1000 genomes]
rs1514119	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1514120	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs167105	1.00[AMR][1000 genomes]
rs1972109	0.90[AFR][1000 genomes]
rs292013	1.00[AMR][1000 genomes]
rs292032	1.00[AMR][1000 genomes]
rs292033	1.00[AMR][1000 genomes]
rs292035	0.90[AFR][1000 genomes]
rs292056	1.00[AMR][1000 genomes]
rs292059	1.00[AMR][1000 genomes]
rs292061	1.00[AMR][1000 genomes]
rs292073	1.00[AMR][1000 genomes]
rs292074	1.00[AMR][1000 genomes]
rs292077	1.00[AMR][1000 genomes]
rs292080	1.00[AMR][1000 genomes]
rs292081	1.00[AMR][1000 genomes]
rs292086	1.00[AMR][1000 genomes]
rs3114007	1.00[AMR][1000 genomes]
rs4692055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs542272	1.00[AMR][1000 genomes]
rs591382	1.00[AMR][1000 genomes]
rs593500	1.00[AMR][1000 genomes]
rs609189	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs638970	1.00[AMR][1000 genomes]
rs6448585	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010133	chr4:28273244-28642942	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1014938	chr4:28277683-28642942	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28500000-28520400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:28515600-28515800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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