Variant report

Variant	rs167105
Chromosome Location	chr4:28481274-28481275
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10026977	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12642509	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12647483	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1399126	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1399127	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1514119	1.00[AMR][1000 genomes]
rs1514120	1.00[AMR][1000 genomes]
rs1546576	1.00[AMR][1000 genomes]
rs292013	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292032	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292033	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292056	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292059	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292061	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292073	1.00[AMR][1000 genomes]
rs292074	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292077	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292080	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292081	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292086	1.00[AMR][1000 genomes]
rs3114007	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4692055	1.00[AMR][1000 genomes]
rs542272	1.00[AMR][1000 genomes]
rs591382	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs593500	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs609189	1.00[AMR][1000 genomes]
rs638970	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6448585	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010133	chr4:28273244-28642942	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1014938	chr4:28277683-28642942	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28476600-28484400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:28480200-28481400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:28480600-28482200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr4:28480800-28481800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:28480800-28481800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:28480800-28482000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr4:28480800-28482000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr4:28481000-28482000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr4:28481000-28482000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr4:28481000-28482200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr4:28481000-28482200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr4:28481200-28481600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:28481200-28481800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:28481200-28481800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:28481200-28482000	Enhancers	H9 Cell Line	embryonic stem cell
16	chr4:28481200-28482000	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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