Variant report

Variant	rs292056
Chromosome Location	chr4:28505045-28505046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10026977	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12642509	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12647483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1399126	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1399127	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1514119	1.00[AMR][1000 genomes]
rs1514120	1.00[AMR][1000 genomes]
rs1546576	1.00[AMR][1000 genomes]
rs167105	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292013	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292059	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292061	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292073	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292074	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292077	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292080	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292081	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs292086	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3114007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4692055	1.00[AMR][1000 genomes]
rs542272	1.00[AMR][1000 genomes]
rs591382	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs593500	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs609189	1.00[AMR][1000 genomes]
rs611374	0.83[AFR][1000 genomes]
rs638970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6448585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010133	chr4:28273244-28642942	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1014938	chr4:28277683-28642942	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28500000-28520400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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