Variant report

Variant	rs1546819
Chromosome Location	chr10:89602150-89602151
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZBTB33	chr10:89601965-89602447	A549	lung:	n/a	n/a
2	GTF3C2	chr10:89602139-89602547	Hela-S3	cervix:	n/a	n/a
3	SP1	chr10:89601810-89602700	HCT-116	colon:	n/a	n/a
4	SIX5	chr10:89601869-89602546	A549	lung:	n/a	n/a
5	SMC3	chr10:89602104-89602434	Hela-S3	cervix:	n/a	n/a
6	TCF12	chr10:89601854-89602462	A549	lung:	n/a	chr10:89602243-89602252
7	USF2	chr10:89602141-89602415	Hela-S3	cervix:	n/a	n/a
8	STAT3	chr10:89601944-89602429	MCF10A-Er-Src	breast:	n/a	chr10:89602147-89602155
9	TEAD4	chr10:89601973-89602503	HepG2	liver:	n/a	n/a
10	JUND	chr10:89601978-89602529	MCF-7	breast:	n/a	chr10:89602232-89602240 chr10:89602231-89602241 chr10:89602230-89602241 chr10:89602231-89602241
11	STAT3	chr10:89602009-89602349	Hela-S3	cervix:	n/a	chr10:89602147-89602155
12	RPC155	chr10:89602093-89602830	Hela-S3	cervix:	n/a	n/a
13	EP300	chr10:89601864-89602556	A549	lung:	n/a	n/a
14	GATA3	chr10:89601965-89602383	T-47D	breast:	n/a	n/a
15	SP1	chr10:89601808-89602568	A549	lung:	n/a	n/a
16	POLR2A	chr10:89602148-89602432	HCT-116	colon:	n/a	n/a
17	REST	chr10:89601846-89602447	A549	lung:	n/a	n/a
18	FOXM1	chr10:89601961-89602477	MCF-7	breast:	n/a	n/a
19	GATA3	chr10:89601851-89602562	MCF-7	breast:	n/a	n/a
20	SIN3AK20	chr10:89601779-89602431	MCF-7	breast:	n/a	n/a
21	FOXA1	chr10:89602044-89602328	T-47D	breast:	n/a	chr10:89602241-89602256
22	POLR2A	chr10:89602056-89602406	Hela-S3	cervix:	n/a	n/a
23	MAX	chr10:89601820-89602621	A549	lung:	n/a	n/a
24	CBX3	chr10:89601797-89602631	HCT-116	colon:	n/a	n/a
25	SP1	chr10:89601804-89602530	A549	lung:	n/a	n/a
26	NR3C1	chr10:89602024-89602412	A549	lung:	n/a	chr10:89602231-89602240
27	POLR2A	chr10:89601924-89602463	HCT-116	colon:	n/a	n/a
28	GATA3	chr10:89601873-89602599	MCF-7	breast:	n/a	n/a
29	RCOR1	chr10:89602093-89602301	HepG2	liver:	n/a	n/a
30	CEBPB	chr10:89601882-89602405	A549	lung:	n/a	n/a
31	FOSL1	chr10:89601837-89602499	HCT-116	colon:	n/a	chr10:89602232-89602240 chr10:89602231-89602241 chr10:89602231-89602241
32	STAT3	chr10:89601888-89602375	MCF10A-Er-Src	breast:	n/a	chr10:89602147-89602155
33	MAFK	chr10:89602131-89602320	H1-hESC	embryonic stem cell:	n/a	n/a
34	STAT3	chr10:89601923-89602448	MCF10A-Er-Src	breast:	n/a	chr10:89602147-89602155
35	USF1	chr10:89601915-89602453	A549	lung:	n/a	n/a
36	ATF3	chr10:89601808-89602461	A549	lung:	n/a	n/a
37	FOXA2	chr10:89601814-89602570	A549	lung:	n/a	n/a
38	JUN	chr10:89602080-89602391	HepG2	liver:	n/a	chr10:89602232-89602240 chr10:89602231-89602241 chr10:89602231-89602241
39	POLR2A	chr10:89601947-89602474	PANC-1	pancreas:	n/a	n/a
40	FOS	chr10:89601996-89602418	MCF10A-Er-Src	breast:	n/a	chr10:89602232-89602240 chr10:89602231-89602241 chr10:89602231-89602241
41	TCF7L2	chr10:89602018-89602517	Hela-S3	cervix:	n/a	chr10:89602231-89602240
42	NR3C1	chr10:89601989-89602474	A549	lung:	n/a	chr10:89602231-89602240
43	RCOR1	chr10:89601872-89602459	Hela-S3	cervix:	n/a	n/a
44	NR2F2	chr10:89601814-89602504	MCF-7	breast:	n/a	n/a
45	EP300	chr10:89601770-89602626	A549	lung:	n/a	n/a
46	FOXA1	chr10:89601922-89602465	HepG2	liver:	n/a	chr10:89602241-89602256
47	TCF7L2	chr10:89602072-89602360	PANC-1	pancreas:	n/a	chr10:89602231-89602240
48	TCF12	chr10:89601728-89602648	A549	lung:	n/a	chr10:89602243-89602252
49	MYC	chr10:89602000-89602410	MCF10A-Er-Src	breast:	n/a	n/a
50	FOS	chr10:89601966-89602429	MCF10A-Er-Src	breast:	n/a	chr10:89602232-89602240 chr10:89602231-89602241 chr10:89602231-89602241

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89599285..89602910-chr10:89620636..89623406,5	MCF-7	breast:

Variant related genes	Relation type
CFL1P1	TF binding region
ATAD1	TF binding region
ENSG00000171862	Chromatin interaction
ENSG00000227268	Chromatin interaction

rs_ID	r²[population]
rs17106624	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17107012	0.80[AFR][1000 genomes]
rs34453563	1.00[AMR][1000 genomes]
rs35168634	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7079894	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7081078	1.00[AMR][1000 genomes]
rs7099956	1.00[AMR][1000 genomes]

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89592800-89603200	Weak transcription	Aorta	Aorta
2	chr10:89597800-89602200	Weak transcription	GM12878-XiMat	blood
3	chr10:89597800-89603000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr10:89597800-89604000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr10:89600400-89603200	Enhancers	Fetal Intestine Small	intestine
6	chr10:89600800-89603200	Enhancers	Fetal Intestine Large	intestine
7	chr10:89600800-89604200	Enhancers	A549	lung
8	chr10:89600800-89604400	Enhancers	Hela-S3	cervix
9	chr10:89601000-89603000	Enhancers	Duodenum Mucosa	Duodenum
10	chr10:89601000-89604800	Enhancers	Stomach Mucosa	stomach
11	chr10:89601000-89606400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:89601000-89606800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:89601200-89602200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:89601200-89602200	Weak transcription	Pancreas	Pancrea
15	chr10:89601400-89602400	Active TSS	Rectal Mucosa Donor 29	rectum
16	chr10:89601400-89603400	Enhancers	HepG2	liver
17	chr10:89601400-89603800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:89601400-89606400	Enhancers	HMEC	breast
19	chr10:89601600-89603200	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr10:89601800-89604200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr10:89601800-89604600	Enhancers	Placenta	Placenta
22	chr10:89601800-89606400	Enhancers	NHEK	skin
23	chr10:89602000-89603400	Enhancers	NHLF	lung
24	chr10:89602000-89603800	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr10:89602000-89603800	Enhancers	Osteobl	bone

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