Variant report

Variant	rs7079894
Chromosome Location	chr10:89676228-89676229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:89675397..89677739-chr10:89684707..89687220,2	K562	blood:
2	chr10:89671040..89673279-chr10:89675598..89677494,2	K562	blood:
3	chr10:89673644..89678140-chr10:89679296..89683460,5	K562	blood:

Variant related genes	Relation type
ENSG00000171862	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1546819	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106624	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17107012	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs34453563	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35168634	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6586108	1.00[MEX][hapmap]
rs7076477	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs7078674	1.00[ASW][hapmap]
rs7081078	1.00[AMR][1000 genomes]
rs7091891	0.82[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.82[YRI][hapmap]
rs7099956	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1035154	chr10:89657150-89676485	Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89647000-89711200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:89648000-89683000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:89658400-89676400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr10:89663600-89686400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:89663600-89687400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:89663800-89725400	Weak transcription	Colonic Mucosa	Colon
7	chr10:89664000-89681800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:89664800-89676400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr10:89666000-89712400	Weak transcription	Fetal Brain Male	brain
10	chr10:89666600-89682800	Weak transcription	Placenta	Placenta
11	chr10:89671600-89682800	Weak transcription	Spleen	Spleen
12	chr10:89672000-89681600	Weak transcription	Aorta	Aorta
13	chr10:89673400-89679800	Genic enhancers	Dnd41	blood
14	chr10:89673600-89679400	Weak transcription	Brain Hippocampus Middle	brain
15	chr10:89673600-89726000	Weak transcription	Brain Substantia Nigra	brain
16	chr10:89674000-89685600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:89674200-89676400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:89674200-89695200	Weak transcription	Brain Cingulate Gyrus	brain
19	chr10:89674200-89711000	Weak transcription	HepG2	liver
20	chr10:89674600-89678400	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr10:89674600-89682600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr10:89674600-89684400	Weak transcription	Fetal Kidney	kidney
23	chr10:89674600-89686400	Weak transcription	HSMMtube	muscle
24	chr10:89674600-89687000	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr10:89674600-89689800	Weak transcription	Fetal Lung	lung
26	chr10:89674600-89695600	Weak transcription	Fetal Muscle Trunk	muscle
27	chr10:89674800-89678800	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr10:89674800-89682200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr10:89674800-89724400	Weak transcription	Fetal Brain Female	brain
30	chr10:89675000-89676600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr10:89675000-89676600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:89675000-89677000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr10:89675000-89679000	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr10:89675000-89679800	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr10:89675200-89676600	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr10:89675200-89676600	Genic enhancers	Primary hematopoietic stem cells	blood
37	chr10:89675200-89676600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr10:89675200-89676600	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr10:89675200-89676600	Enhancers	Brain Anterior Caudate	brain
40	chr10:89675200-89676600	Genic enhancers	Fetal Thymus	thymus
41	chr10:89675200-89676600	Enhancers	Left Ventricle	heart
42	chr10:89675200-89676600	Enhancers	Right Atrium	heart
43	chr10:89675200-89676600	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr10:89675200-89676600	Genic enhancers	Thymus	Thymus
45	chr10:89675200-89676600	Genic enhancers	Hela-S3	cervix
46	chr10:89675200-89676600	Enhancers	HMEC	breast
47	chr10:89675200-89676600	Enhancers	NHDF-Ad	bronchial
48	chr10:89675200-89677200	Enhancers	A549	lung
49	chr10:89675200-89678200	Enhancers	Primary monocytes fromperipheralblood	blood
50	chr10:89675200-89678600	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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