Variant report

Variant	rs17107012
Chromosome Location	chr10:89687488-89687489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89686969..89688514-chr10:89688807..89691753,2	K562	blood:
2	chr10:89685840..89688439-chr10:89700788..89703474,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1546819	0.80[AFR][1000 genomes]
rs17106624	0.93[AFR][1000 genomes]
rs34453563	0.86[AFR][1000 genomes]
rs34870602	1.00[ASN][1000 genomes]
rs35168634	0.93[AFR][1000 genomes]
rs35304862	1.00[ASN][1000 genomes]
rs35560700	1.00[ASN][1000 genomes]
rs7076477	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7078405	1.00[AMR][1000 genomes]
rs7078674	1.00[AMR][1000 genomes]
rs7079894	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7091891	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs7896192	1.00[AMR][1000 genomes]
rs9783193	1.00[ASN][1000 genomes]
rs9783236	1.00[ASN][1000 genomes]
rs9783238	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1044043	chr10:89678935-89701069	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89647000-89711200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:89663800-89725400	Weak transcription	Colonic Mucosa	Colon
3	chr10:89666000-89712400	Weak transcription	Fetal Brain Male	brain
4	chr10:89673600-89726000	Weak transcription	Brain Substantia Nigra	brain
5	chr10:89674200-89695200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr10:89674200-89711000	Weak transcription	HepG2	liver
7	chr10:89674600-89689800	Weak transcription	Fetal Lung	lung
8	chr10:89674600-89695600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr10:89674800-89724400	Weak transcription	Fetal Brain Female	brain
10	chr10:89675400-89726000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:89675600-89705000	Weak transcription	Fetal Stomach	stomach
12	chr10:89675600-89705200	Weak transcription	Esophagus	oesophagus
13	chr10:89676600-89695400	Weak transcription	Brain Anterior Caudate	brain
14	chr10:89676800-89691000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr10:89677200-89688200	Weak transcription	A549	lung
16	chr10:89678000-89694200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr10:89679800-89691600	Weak transcription	Brain Hippocampus Middle	brain
18	chr10:89681600-89689400	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr10:89681800-89691200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:89682000-89705200	Weak transcription	Fetal Intestine Small	intestine
21	chr10:89682000-89705200	Weak transcription	Left Ventricle	heart
22	chr10:89682000-89705600	Weak transcription	Lung	lung
23	chr10:89682400-89690400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr10:89682400-89705200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:89682800-89689200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr10:89683200-89687800	Strong transcription	Fetal Thymus	thymus
27	chr10:89683200-89695600	Weak transcription	Fetal Muscle Leg	muscle
28	chr10:89683200-89705000	Weak transcription	Thymus	Thymus
29	chr10:89683200-89715200	Weak transcription	Pancreas	Pancrea
30	chr10:89683200-89720800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr10:89683200-89723800	Weak transcription	Psoas Muscle	Psoas
32	chr10:89684000-89707400	Strong transcription	Dnd41	blood
33	chr10:89684000-89725600	Weak transcription	Gastric	stomach
34	chr10:89684000-89726200	Weak transcription	Spleen	Spleen
35	chr10:89684200-89690400	Weak transcription	Colon Smooth Muscle	Colon
36	chr10:89684800-89702200	Weak transcription	Fetal Kidney	kidney
37	chr10:89685000-89688400	Enhancers	Fetal Heart	heart
38	chr10:89685200-89687600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr10:89685400-89687600	Genic enhancers	Primary hematopoietic stem cells	blood
40	chr10:89685400-89687600	Strong transcription	Duodenum Mucosa	Duodenum
41	chr10:89685400-89688000	Enhancers	Osteobl	bone
42	chr10:89685400-89692200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr10:89685600-89688200	Genic enhancers	GM12878-XiMat	blood
44	chr10:89685800-89688200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
45	chr10:89685800-89688600	Enhancers	NHDF-Ad	bronchial
46	chr10:89685800-89712400	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr10:89686000-89688200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
48	chr10:89686000-89688400	Genic enhancers	Monocytes-CD14+_RO01746	blood
49	chr10:89686200-89687600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr10:89686200-89687800	Genic enhancers	Primary neutrophils fromperipheralblood	blood

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