Variant report

Variant	rs9783236
Chromosome Location	chr10:89719368-89719369
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17107012	1.00[ASN][1000 genomes]
rs34140758	0.95[AFR][1000 genomes]
rs34144152	1.00[AMR][1000 genomes]
rs34370865	1.00[AMR][1000 genomes]
rs34826144	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34870602	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35304862	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35560700	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35593536	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35608752	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7085552	1.00[AMR][1000 genomes]
rs7897915	1.00[AMR][1000 genomes]
rs7917439	0.83[AFR][1000 genomes]
rs9783193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9783238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv1794722	chr10:89690827-89725294	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv551837	chr10:89707265-89777788	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89663800-89725400	Weak transcription	Colonic Mucosa	Colon
2	chr10:89673600-89726000	Weak transcription	Brain Substantia Nigra	brain
3	chr10:89674800-89724400	Weak transcription	Fetal Brain Female	brain
4	chr10:89675400-89726000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:89683200-89720800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr10:89683200-89723800	Weak transcription	Psoas Muscle	Psoas
7	chr10:89684000-89725600	Weak transcription	Gastric	stomach
8	chr10:89684000-89726200	Weak transcription	Spleen	Spleen
9	chr10:89687600-89725600	Weak transcription	Right Ventricle	heart
10	chr10:89690200-89725400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr10:89692200-89724800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:89696000-89721000	Weak transcription	Brain Angular Gyrus	brain
13	chr10:89696600-89734600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr10:89698800-89725600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:89699000-89729200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr10:89700200-89723600	Weak transcription	Ovary	ovary
17	chr10:89701200-89725600	Weak transcription	Fetal Heart	heart
18	chr10:89704800-89727000	Weak transcription	Brain Hippocampus Middle	brain
19	chr10:89706200-89723800	Weak transcription	Lung	lung
20	chr10:89708800-89724000	Weak transcription	Left Ventricle	heart
21	chr10:89708800-89734400	Weak transcription	Aorta	Aorta
22	chr10:89709000-89724600	Weak transcription	K562	blood
23	chr10:89709200-89719800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:89709400-89724000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr10:89711000-89728000	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr10:89711200-89726000	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr10:89711200-89727000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:89711800-89720800	Weak transcription	HepG2	liver
29	chr10:89712400-89725800	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr10:89712600-89721200	Weak transcription	Brain Anterior Caudate	brain
31	chr10:89712600-89731000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr10:89712800-89721000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr10:89712800-89721000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr10:89713000-89720000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr10:89713000-89721000	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr10:89713000-89723200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr10:89713000-89725400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr10:89713000-89728800	Weak transcription	Stomach Smooth Muscle	stomach
39	chr10:89713000-89733200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr10:89713200-89721000	Weak transcription	HMEC	breast
41	chr10:89713200-89721200	Weak transcription	HSMMtube	muscle
42	chr10:89713200-89724800	Weak transcription	Brain Cingulate Gyrus	brain
43	chr10:89713200-89729600	Weak transcription	Fetal Brain Male	brain
44	chr10:89713400-89719400	Weak transcription	HUVEC	blood vessel
45	chr10:89713400-89721000	Weak transcription	Colon Smooth Muscle	Colon
46	chr10:89713400-89721200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr10:89713800-89721400	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr10:89714200-89721000	Weak transcription	Fetal Muscle Trunk	muscle
49	chr10:89714200-89721000	Weak transcription	Rectal Smooth Muscle	rectum
50	chr10:89714600-89719800	Weak transcription	Fetal Kidney	kidney

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