Variant report

Variant	rs34140758
Chromosome Location	chr10:89726794-89726795
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89724975..89728613-chr10:89729224..89733070,3	K562	blood:
2	chr10:89724830..89727506-chr10:89728128..89730724,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs17108692	1.00[EUR][1000 genomes]
rs17108887	1.00[EUR][1000 genomes]
rs17108894	1.00[EUR][1000 genomes]
rs17388036	1.00[EUR][1000 genomes]
rs34144152	1.00[EUR][1000 genomes]
rs34260450	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34370865	1.00[EUR][1000 genomes]
rs34826144	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34870602	0.91[AFR][1000 genomes]
rs35304862	0.83[AFR][1000 genomes]
rs35560700	0.83[AFR][1000 genomes]
rs35593536	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35608752	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60189638	1.00[EUR][1000 genomes]
rs7085552	1.00[EUR][1000 genomes]
rs74146649	1.00[EUR][1000 genomes]
rs74146650	1.00[EUR][1000 genomes]
rs74146651	1.00[EUR][1000 genomes]
rs74146652	1.00[EUR][1000 genomes]
rs74146653	1.00[EUR][1000 genomes]
rs7896751	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7897915	1.00[EUR][1000 genomes]
rs7917439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7917883	1.00[EUR][1000 genomes]
rs9783193	0.95[AFR][1000 genomes]
rs9783236	0.95[AFR][1000 genomes]
rs9783238	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv551837	chr10:89707265-89777788	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89696600-89734600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:89699000-89729200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:89704800-89727000	Weak transcription	Brain Hippocampus Middle	brain
4	chr10:89708800-89734400	Weak transcription	Aorta	Aorta
5	chr10:89711000-89728000	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr10:89711200-89727000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:89712600-89731000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr10:89713000-89728800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:89713000-89733200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr10:89713200-89729600	Weak transcription	Fetal Brain Male	brain
11	chr10:89714600-89738600	Weak transcription	NHEK	skin
12	chr10:89715600-89726800	Weak transcription	Esophagus	oesophagus
13	chr10:89715600-89727400	Weak transcription	Pancreas	Pancrea
14	chr10:89715600-89728000	Weak transcription	Small Intestine	intestine
15	chr10:89717000-89727800	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr10:89717600-89727000	Strong transcription	Placenta	Placenta
17	chr10:89718000-89727000	Strong transcription	Dnd41	blood
18	chr10:89718400-89728600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr10:89721400-89727000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr10:89721600-89731800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr10:89721800-89735800	Weak transcription	A549	lung
22	chr10:89722000-89727000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:89722000-89736000	Weak transcription	NHLF	lung
24	chr10:89723400-89728800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr10:89723600-89728600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr10:89723800-89726800	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr10:89724000-89727200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr10:89724000-89727400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr10:89724000-89727800	Weak transcription	NHDF-Ad	bronchial
30	chr10:89724000-89728600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr10:89724000-89733200	Weak transcription	HSMM	muscle
32	chr10:89724000-89739000	Weak transcription	Adipose Nuclei	Adipose
33	chr10:89724200-89727200	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr10:89724200-89727600	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr10:89724200-89729000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr10:89724200-89729800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr10:89724200-89730600	Weak transcription	HSMMtube	muscle
38	chr10:89724200-89731200	Weak transcription	Rectal Smooth Muscle	rectum
39	chr10:89724200-89738600	Weak transcription	HMEC	breast
40	chr10:89724200-89738800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr10:89724400-89727600	Weak transcription	Fetal Kidney	kidney
42	chr10:89724400-89728200	Weak transcription	Osteobl	bone
43	chr10:89724400-89729400	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr10:89724400-89733400	Weak transcription	Hela-S3	cervix
45	chr10:89724400-89738200	Weak transcription	Primary hematopoietic stem cells	blood
46	chr10:89724400-89738600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr10:89724600-89727000	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr10:89724600-89727200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr10:89724600-89729000	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr10:89724600-89732400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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