Variant report

Variant	rs74146651
Chromosome Location	chr10:89857041-89857042
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12243208	1.00[EUR][1000 genomes]
rs17108692	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17108887	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17108894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17110722	1.00[EUR][1000 genomes]
rs17111076	1.00[EUR][1000 genomes]
rs17388036	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34140758	1.00[EUR][1000 genomes]
rs34144152	1.00[EUR][1000 genomes]
rs34826144	1.00[EUR][1000 genomes]
rs35593536	1.00[EUR][1000 genomes]
rs35608752	1.00[EUR][1000 genomes]
rs7070742	1.00[EUR][1000 genomes]
rs7084060	1.00[EUR][1000 genomes]
rs74146649	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74146650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74146652	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74146653	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7896751	1.00[EUR][1000 genomes]
rs7897915	1.00[EUR][1000 genomes]
rs7917883	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89851800-89857400	Enhancers	Dnd41	blood
2	chr10:89853000-89857200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:89853400-89857200	Weak transcription	Fetal Heart	heart
4	chr10:89853400-89857800	Weak transcription	Primary B cells from cord blood	blood
5	chr10:89853800-89860800	Weak transcription	GM12878-XiMat	blood
6	chr10:89855400-89857200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:89855600-89857200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:89855800-89857200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:89856000-89857200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:89856000-89857200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr10:89856000-89860200	Weak transcription	NHDF-Ad	bronchial
12	chr10:89856000-89860200	Weak transcription	NHLF	lung
13	chr10:89856000-89864800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:89856200-89858600	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr10:89856800-89857200	Weak transcription	Liver	Liver
16	chr10:89856800-89857600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr10:89857000-89857800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:89857000-89858800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
19	chr10:89857000-89860800	Weak transcription	Muscle Satellite Cultured Cells	--

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