Variant report

Variant	rs34826144
Chromosome Location	chr10:89693300-89693301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89692563..89694138-chr10:89862900..89864985,2	MCF-7	breast:
2	chr10:89620590..89623557-chr10:89689802..89694135,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171862	Chromatin interaction
ENSG00000227268	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs17108692	1.00[EUR][1000 genomes]
rs17108887	1.00[EUR][1000 genomes]
rs17108894	1.00[EUR][1000 genomes]
rs17388036	1.00[EUR][1000 genomes]
rs34140758	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34144152	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34260450	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34370865	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34870602	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35304862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35560700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35593536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35608752	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60189638	1.00[EUR][1000 genomes]
rs7085552	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74146649	1.00[EUR][1000 genomes]
rs74146650	1.00[EUR][1000 genomes]
rs74146651	1.00[EUR][1000 genomes]
rs74146652	1.00[EUR][1000 genomes]
rs74146653	1.00[EUR][1000 genomes]
rs7896751	1.00[EUR][1000 genomes]
rs7897915	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7917439	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7917883	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9783193	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9783236	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9783238	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1044043	chr10:89678935-89701069	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1794722	chr10:89690827-89725294	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89647000-89711200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:89663800-89725400	Weak transcription	Colonic Mucosa	Colon
3	chr10:89666000-89712400	Weak transcription	Fetal Brain Male	brain
4	chr10:89673600-89726000	Weak transcription	Brain Substantia Nigra	brain
5	chr10:89674200-89695200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr10:89674200-89711000	Weak transcription	HepG2	liver
7	chr10:89674600-89695600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr10:89674800-89724400	Weak transcription	Fetal Brain Female	brain
9	chr10:89675400-89726000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:89675600-89705000	Weak transcription	Fetal Stomach	stomach
11	chr10:89675600-89705200	Weak transcription	Esophagus	oesophagus
12	chr10:89676600-89695400	Weak transcription	Brain Anterior Caudate	brain
13	chr10:89678000-89694200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr10:89682000-89705200	Weak transcription	Fetal Intestine Small	intestine
15	chr10:89682000-89705200	Weak transcription	Left Ventricle	heart
16	chr10:89682000-89705600	Weak transcription	Lung	lung
17	chr10:89682400-89705200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr10:89683200-89695600	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:89683200-89705000	Weak transcription	Thymus	Thymus
20	chr10:89683200-89715200	Weak transcription	Pancreas	Pancrea
21	chr10:89683200-89720800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr10:89683200-89723800	Weak transcription	Psoas Muscle	Psoas
23	chr10:89684000-89707400	Strong transcription	Dnd41	blood
24	chr10:89684000-89725600	Weak transcription	Gastric	stomach
25	chr10:89684000-89726200	Weak transcription	Spleen	Spleen
26	chr10:89684800-89702200	Weak transcription	Fetal Kidney	kidney
27	chr10:89685800-89712400	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr10:89686600-89695600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr10:89686600-89698800	Weak transcription	K562	blood
30	chr10:89686600-89711200	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr10:89686800-89708400	Weak transcription	Aorta	Aorta
32	chr10:89686800-89710400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr10:89687000-89712200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr10:89687200-89694000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr10:89687200-89705800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr10:89687200-89705800	Weak transcription	Small Intestine	intestine
37	chr10:89687400-89694000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr10:89687400-89695400	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr10:89687400-89695600	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr10:89687400-89695600	Weak transcription	Fetal Intestine Large	intestine
41	chr10:89687400-89695600	Weak transcription	Ovary	ovary
42	chr10:89687400-89715200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr10:89687600-89695600	Weak transcription	Brain Angular Gyrus	brain
44	chr10:89687600-89711400	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr10:89687600-89725600	Weak transcription	Right Ventricle	heart
46	chr10:89689200-89695000	Weak transcription	Adipose Nuclei	Adipose
47	chr10:89689800-89693400	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr10:89690200-89725400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr10:89690400-89695600	Weak transcription	Rectal Smooth Muscle	rectum
50	chr10:89691000-89694200	Strong transcription	Rectal Mucosa Donor 31	rectum

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