Variant report

Variant	rs7897915
Chromosome Location	chr10:89652003-89652004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89577513..89579875-chr10:89651204..89652722,2	MCF-7	breast:
2	chr10:89620623..89623024-chr10:89650923..89652656,2	K562	blood:

Variant related genes	Relation type
ENSG00000138138	Chromatin interaction
ENSG00000171862	Chromatin interaction
ENSG00000223820	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs17108692	1.00[EUR][1000 genomes]
rs17108887	1.00[EUR][1000 genomes]
rs17108894	1.00[EUR][1000 genomes]
rs34140758	1.00[EUR][1000 genomes]
rs34144152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34260450	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34370865	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34826144	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34870602	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35304862	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35560700	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35593536	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35608752	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60189638	1.00[EUR][1000 genomes]
rs7085552	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74146649	1.00[EUR][1000 genomes]
rs74146650	1.00[EUR][1000 genomes]
rs74146651	1.00[EUR][1000 genomes]
rs74146652	1.00[EUR][1000 genomes]
rs74146653	1.00[EUR][1000 genomes]
rs7896751	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs7917439	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7917883	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9783193	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9783236	1.00[AMR][1000 genomes]
rs9783238	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1050406	chr10:89632138-89657906	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv1833763	chr10:89649838-89653686	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89625600-89663000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:89628400-89662000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:89631000-89663400	Weak transcription	Brain Angular Gyrus	brain
4	chr10:89633000-89663400	Weak transcription	Pancreas	Pancrea
5	chr10:89633400-89675800	Weak transcription	Small Intestine	intestine
6	chr10:89633800-89655600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:89636000-89655400	Weak transcription	Brain Substantia Nigra	brain
8	chr10:89636200-89661800	Weak transcription	Brain Anterior Caudate	brain
9	chr10:89639000-89655400	Weak transcription	Fetal Heart	heart
10	chr10:89639000-89655400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr10:89639000-89656200	Weak transcription	Stomach Mucosa	stomach
12	chr10:89641600-89663000	Weak transcription	Esophagus	oesophagus
13	chr10:89642400-89652400	Weak transcription	Aorta	Aorta
14	chr10:89642600-89657000	Strong transcription	Dnd41	blood
15	chr10:89644600-89654000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr10:89646600-89652600	Weak transcription	NHDF-Ad	bronchial
17	chr10:89646600-89663800	Weak transcription	Fetal Kidney	kidney
18	chr10:89646800-89652400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr10:89646800-89655800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr10:89646800-89657400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr10:89646800-89659400	Strong transcription	Fetal Thymus	thymus
22	chr10:89646800-89663000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr10:89647000-89652600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr10:89647000-89655400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr10:89647000-89667400	Weak transcription	HMEC	breast
26	chr10:89647000-89711200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr10:89647200-89652600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr10:89647200-89657400	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr10:89647200-89662000	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr10:89647200-89675400	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr10:89647600-89655400	Weak transcription	Fetal Brain Female	brain
32	chr10:89647600-89656600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr10:89647600-89657000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr10:89647600-89671800	Weak transcription	HUVEC	blood vessel
35	chr10:89647800-89655600	Weak transcription	Liver	Liver
36	chr10:89647800-89657000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr10:89647800-89662000	Weak transcription	Duodenum Mucosa	Duodenum
38	chr10:89647800-89665600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr10:89647800-89671000	Weak transcription	A549	lung
40	chr10:89648000-89652400	Weak transcription	NHLF	lung
41	chr10:89648000-89652600	Weak transcription	Brain Germinal Matrix	brain
42	chr10:89648000-89654600	Weak transcription	Psoas Muscle	Psoas
43	chr10:89648000-89656800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr10:89648000-89656800	Weak transcription	Fetal Intestine Small	intestine
45	chr10:89648000-89656800	Weak transcription	Left Ventricle	heart
46	chr10:89648000-89657800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr10:89648000-89657800	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr10:89648000-89663000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr10:89648000-89663000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr10:89648000-89663000	Weak transcription	Lung	lung

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