Variant report

Variant	rs7917439
Chromosome Location	chr10:89617507-89617508
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs34140758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34144152	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34260450	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34370865	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34826144	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35304862	0.87[AFR][1000 genomes]
rs35560700	0.87[AFR][1000 genomes]
rs35593536	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35608752	1.00[EUR][1000 genomes]
rs60189638	1.00[EUR][1000 genomes]
rs7085552	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7896751	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7897915	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7917883	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9783193	0.83[AFR][1000 genomes]
rs9783236	0.83[AFR][1000 genomes]
rs9783238	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041392	chr10:89615125-89632510	Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1044700	chr10:89615125-89641293	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89611400-89620000	Weak transcription	Fetal Thymus	thymus
2	chr10:89615000-89620200	Weak transcription	Placenta	Placenta
3	chr10:89615200-89620200	Weak transcription	Primary T cells from cord blood	blood
4	chr10:89615800-89619800	Weak transcription	Dnd41	blood
5	chr10:89617000-89621400	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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