Variant report

Variant	rs35608752
Chromosome Location	chr10:89711036-89711037
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:89710646-89711056	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
PTEN	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs17108692	1.00[EUR][1000 genomes]
rs17108887	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17108894	1.00[EUR][1000 genomes]
rs17388036	1.00[EUR][1000 genomes]
rs34140758	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34144152	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34260450	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs34370865	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34826144	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34870602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35304862	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35560700	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35593536	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60189638	1.00[EUR][1000 genomes]
rs7085552	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74146649	1.00[EUR][1000 genomes]
rs74146650	1.00[EUR][1000 genomes]
rs74146651	1.00[EUR][1000 genomes]
rs74146652	1.00[EUR][1000 genomes]
rs74146653	1.00[EUR][1000 genomes]
rs7896751	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs7897915	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7917439	1.00[EUR][1000 genomes]
rs7917883	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9783193	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9783236	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9783238	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv1794722	chr10:89690827-89725294	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv551837	chr10:89707265-89777788	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89647000-89711200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:89663800-89725400	Weak transcription	Colonic Mucosa	Colon
3	chr10:89666000-89712400	Weak transcription	Fetal Brain Male	brain
4	chr10:89673600-89726000	Weak transcription	Brain Substantia Nigra	brain
5	chr10:89674800-89724400	Weak transcription	Fetal Brain Female	brain
6	chr10:89675400-89726000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:89683200-89715200	Weak transcription	Pancreas	Pancrea
8	chr10:89683200-89720800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr10:89683200-89723800	Weak transcription	Psoas Muscle	Psoas
10	chr10:89684000-89725600	Weak transcription	Gastric	stomach
11	chr10:89684000-89726200	Weak transcription	Spleen	Spleen
12	chr10:89685800-89712400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr10:89686600-89711200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr10:89687000-89712200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr10:89687400-89715200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:89687600-89711400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr10:89687600-89725600	Weak transcription	Right Ventricle	heart
18	chr10:89690200-89725400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr10:89691600-89711400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr10:89692200-89712000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr10:89692200-89724800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr10:89695600-89711400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr10:89695800-89712200	Weak transcription	Brain Anterior Caudate	brain
24	chr10:89695800-89712200	Weak transcription	Colon Smooth Muscle	Colon
25	chr10:89696000-89712000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr10:89696000-89712200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr10:89696000-89721000	Weak transcription	Brain Angular Gyrus	brain
28	chr10:89696600-89712000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr10:89696600-89734600	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr10:89697400-89712000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr10:89698800-89725600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr10:89699000-89712000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr10:89699000-89718200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr10:89699000-89729200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr10:89699200-89711600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr10:89700200-89723600	Weak transcription	Ovary	ovary
37	chr10:89701200-89725600	Weak transcription	Fetal Heart	heart
38	chr10:89701400-89712400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr10:89701800-89714000	Weak transcription	Brain Germinal Matrix	brain
40	chr10:89702000-89715800	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr10:89702400-89711400	Weak transcription	Duodenum Mucosa	Duodenum
42	chr10:89702400-89711800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr10:89703000-89711400	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr10:89704600-89712600	Weak transcription	Brain Cingulate Gyrus	brain
45	chr10:89704800-89727000	Weak transcription	Brain Hippocampus Middle	brain
46	chr10:89705400-89712200	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr10:89705400-89712600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr10:89705600-89711200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr10:89705800-89711200	Weak transcription	Placenta	Placenta
50	chr10:89705800-89711400	Weak transcription	Fetal Muscle Trunk	muscle

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