Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89853824..89856538-chr10:89858985..89861232,2	K562	blood:
2	chr10:89621225..89624857-chr10:89859723..89863066,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227268	Chromatin interaction
ENSG00000171862	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12243208	1.00[EUR][1000 genomes]
rs17108692	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17108887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17108894	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17110722	1.00[EUR][1000 genomes]
rs17111076	1.00[EUR][1000 genomes]
rs17388036	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34140758	1.00[EUR][1000 genomes]
rs34826144	1.00[EUR][1000 genomes]
rs35593536	1.00[EUR][1000 genomes]
rs35608752	1.00[EUR][1000 genomes]
rs7070742	1.00[EUR][1000 genomes]
rs7084060	1.00[EUR][1000 genomes]
rs74146649	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74146650	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74146651	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74146652	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7896751	1.00[EUR][1000 genomes]
rs7897915	1.00[EUR][1000 genomes]
rs7917883	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89856000-89864800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:89858400-89861000	Weak transcription	Primary B cells from cord blood	blood
3	chr10:89858600-89863200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr10:89859200-89861400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr10:89860000-89861600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr10:89860200-89861000	Enhancers	NHDF-Ad	bronchial
7	chr10:89860400-89861000	Weak transcription	NHLF	lung
8	chr10:89860400-89861400	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr10:89860800-89861600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr10:89860800-89864200	Enhancers	GM12878-XiMat	blood

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