Variant report

Variant	rs7084060
Chromosome Location	chr10:89992368-89992369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12243208	1.00[EUR][1000 genomes]
rs17108692	1.00[EUR][1000 genomes]
rs17108887	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17108894	1.00[EUR][1000 genomes]
rs17110722	1.00[EUR][1000 genomes]
rs17111076	1.00[EUR][1000 genomes]
rs17111193	1.00[EUR][1000 genomes]
rs17388036	1.00[EUR][1000 genomes]
rs7070742	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74146649	1.00[EUR][1000 genomes]
rs74146650	1.00[EUR][1000 genomes]
rs74146651	1.00[EUR][1000 genomes]
rs74146652	1.00[EUR][1000 genomes]
rs74146653	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895878	chr10:89959082-90006507	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89955400-89998000	Weak transcription	Aorta	Aorta
2	chr10:89978000-89993800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:89987200-89993000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr10:89987200-89993000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:89987800-89992400	Weak transcription	Fetal Lung	lung
6	chr10:89987800-89993400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:89987800-89993800	Weak transcription	Pancreas	Pancrea
8	chr10:89987800-89995600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr10:89988000-89996000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr10:89988200-89993400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr10:89988400-89994000	Weak transcription	Small Intestine	intestine
12	chr10:89988600-89994000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:89988800-89995800	Weak transcription	Thymus	Thymus
14	chr10:89989800-90004200	Weak transcription	Primary B cells from cord blood	blood
15	chr10:89990400-89992400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr10:89990400-89998200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr10:89990800-89993000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:89991200-89993200	Enhancers	Right Atrium	heart
19	chr10:89991200-89994400	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr10:89991400-89993000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:89991400-89994000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:89991400-89994400	Enhancers	Adipose Nuclei	Adipose
23	chr10:89991600-89993200	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr10:89991800-89992600	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr10:89991800-89992800	Enhancers	Stomach Mucosa	stomach
26	chr10:89991800-89993200	Enhancers	Left Ventricle	heart
27	chr10:89991800-89994000	Enhancers	NHDF-Ad	bronchial
28	chr10:89991800-89994200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr10:89991800-89994200	Enhancers	Ovary	ovary
30	chr10:89991800-89994200	Enhancers	Right Ventricle	heart
31	chr10:89991800-89994400	Enhancers	Fetal Muscle Trunk	muscle
32	chr10:89991800-89994400	Enhancers	Fetal Muscle Leg	muscle
33	chr10:89991800-89994400	Enhancers	Placenta	Placenta
34	chr10:89991800-89994600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr10:89991800-89995000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr10:89992000-89992400	Enhancers	Fetal Thymus	thymus
37	chr10:89992000-89992600	Enhancers	Colon Smooth Muscle	Colon
38	chr10:89992000-89992600	Enhancers	Rectal Smooth Muscle	rectum
39	chr10:89992000-89992600	Enhancers	NHLF	lung
40	chr10:89992000-89992800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr10:89992000-89992800	Enhancers	Osteobl	bone
42	chr10:89992000-89993200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr10:89992000-89993600	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr10:89992000-89994400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr10:89992200-89993200	Enhancers	Brain Anterior Caudate	brain
46	chr10:89992200-89994200	Enhancers	Brain Substantia Nigra	brain
47	chr10:89992200-89994200	Enhancers	Fetal Stomach	stomach
48	chr10:89992200-89994400	Enhancers	Brain Hippocampus Middle	brain
49	chr10:89992200-89994600	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr10:89992200-89996200	Weak transcription	Colonic Mucosa	Colon

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