Variant report

Variant	rs34870602
Chromosome Location	chr10:89705371-89705372
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89705366..89707879-chr20:50382836..50384376,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17107012	1.00[ASN][1000 genomes]
rs34140758	0.91[AFR][1000 genomes]
rs34144152	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34370865	1.00[AMR][1000 genomes]
rs34826144	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35304862	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35560700	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35593536	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35608752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7085552	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7897915	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7917883	0.83[AFR][1000 genomes]
rs9783193	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9783236	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9783238	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv1794722	chr10:89690827-89725294	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89647000-89711200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:89663800-89725400	Weak transcription	Colonic Mucosa	Colon
3	chr10:89666000-89712400	Weak transcription	Fetal Brain Male	brain
4	chr10:89673600-89726000	Weak transcription	Brain Substantia Nigra	brain
5	chr10:89674200-89711000	Weak transcription	HepG2	liver
6	chr10:89674800-89724400	Weak transcription	Fetal Brain Female	brain
7	chr10:89675400-89726000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:89682000-89705600	Weak transcription	Lung	lung
9	chr10:89683200-89715200	Weak transcription	Pancreas	Pancrea
10	chr10:89683200-89720800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr10:89683200-89723800	Weak transcription	Psoas Muscle	Psoas
12	chr10:89684000-89707400	Strong transcription	Dnd41	blood
13	chr10:89684000-89725600	Weak transcription	Gastric	stomach
14	chr10:89684000-89726200	Weak transcription	Spleen	Spleen
15	chr10:89685800-89712400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr10:89686600-89711200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr10:89686800-89708400	Weak transcription	Aorta	Aorta
18	chr10:89686800-89710400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr10:89687000-89712200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr10:89687200-89705800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr10:89687200-89705800	Weak transcription	Small Intestine	intestine
22	chr10:89687400-89715200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr10:89687600-89711400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr10:89687600-89725600	Weak transcription	Right Ventricle	heart
25	chr10:89690200-89725400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr10:89691200-89708400	Strong transcription	Fetal Thymus	thymus
27	chr10:89691400-89706400	Strong transcription	Primary B cells from peripheral blood	blood
28	chr10:89691600-89707200	Strong transcription	Primary B cells from cord blood	blood
29	chr10:89691600-89711400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr10:89692200-89706000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr10:89692200-89712000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr10:89692200-89724800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr10:89695600-89711400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr10:89695800-89712200	Weak transcription	Brain Anterior Caudate	brain
35	chr10:89695800-89712200	Weak transcription	Colon Smooth Muscle	Colon
36	chr10:89696000-89712000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr10:89696000-89712200	Weak transcription	Rectal Smooth Muscle	rectum
38	chr10:89696000-89721000	Weak transcription	Brain Angular Gyrus	brain
39	chr10:89696600-89712000	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr10:89696600-89734600	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr10:89697400-89712000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr10:89697800-89706000	Strong transcription	Hela-S3	cervix
43	chr10:89698800-89707000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr10:89698800-89725600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr10:89699000-89712000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr10:89699000-89718200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr10:89699000-89729200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr10:89699200-89707800	Weak transcription	HUVEC	blood vessel
49	chr10:89699200-89711600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr10:89699600-89705400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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