Variant report

Variant	rs35304862
Chromosome Location	chr10:89695370-89695371
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89688499..89690095-chr10:89694777..89697091,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17107012	1.00[ASN][1000 genomes]
rs34140758	0.83[AFR][1000 genomes]
rs34144152	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34260450	0.83[AFR][1000 genomes]
rs34370865	1.00[AMR][1000 genomes]
rs34826144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34870602	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35560700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35593536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35608752	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7085552	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7897915	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7917439	0.87[AFR][1000 genomes]
rs7917883	0.91[AFR][1000 genomes]
rs9783193	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9783236	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9783238	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1044043	chr10:89678935-89701069	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1794722	chr10:89690827-89725294	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89647000-89711200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:89663800-89725400	Weak transcription	Colonic Mucosa	Colon
3	chr10:89666000-89712400	Weak transcription	Fetal Brain Male	brain
4	chr10:89673600-89726000	Weak transcription	Brain Substantia Nigra	brain
5	chr10:89674200-89711000	Weak transcription	HepG2	liver
6	chr10:89674600-89695600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr10:89674800-89724400	Weak transcription	Fetal Brain Female	brain
8	chr10:89675400-89726000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:89675600-89705000	Weak transcription	Fetal Stomach	stomach
10	chr10:89675600-89705200	Weak transcription	Esophagus	oesophagus
11	chr10:89676600-89695400	Weak transcription	Brain Anterior Caudate	brain
12	chr10:89682000-89705200	Weak transcription	Fetal Intestine Small	intestine
13	chr10:89682000-89705200	Weak transcription	Left Ventricle	heart
14	chr10:89682000-89705600	Weak transcription	Lung	lung
15	chr10:89682400-89705200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr10:89683200-89695600	Weak transcription	Fetal Muscle Leg	muscle
17	chr10:89683200-89705000	Weak transcription	Thymus	Thymus
18	chr10:89683200-89715200	Weak transcription	Pancreas	Pancrea
19	chr10:89683200-89720800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr10:89683200-89723800	Weak transcription	Psoas Muscle	Psoas
21	chr10:89684000-89707400	Strong transcription	Dnd41	blood
22	chr10:89684000-89725600	Weak transcription	Gastric	stomach
23	chr10:89684000-89726200	Weak transcription	Spleen	Spleen
24	chr10:89684800-89702200	Weak transcription	Fetal Kidney	kidney
25	chr10:89685800-89712400	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr10:89686600-89695600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:89686600-89698800	Weak transcription	K562	blood
28	chr10:89686600-89711200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr10:89686800-89708400	Weak transcription	Aorta	Aorta
30	chr10:89686800-89710400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr10:89687000-89712200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr10:89687200-89705800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr10:89687200-89705800	Weak transcription	Small Intestine	intestine
34	chr10:89687400-89695400	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr10:89687400-89695600	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr10:89687400-89695600	Weak transcription	Fetal Intestine Large	intestine
37	chr10:89687400-89695600	Weak transcription	Ovary	ovary
38	chr10:89687400-89715200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr10:89687600-89695600	Weak transcription	Brain Angular Gyrus	brain
40	chr10:89687600-89711400	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr10:89687600-89725600	Weak transcription	Right Ventricle	heart
42	chr10:89690200-89725400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr10:89690400-89695600	Weak transcription	Rectal Smooth Muscle	rectum
44	chr10:89691200-89696800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr10:89691200-89698000	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr10:89691200-89708400	Strong transcription	Fetal Thymus	thymus
47	chr10:89691400-89695400	Weak transcription	Primary T cells from cord blood	blood
48	chr10:89691400-89696800	Strong transcription	Primary neutrophils fromperipheralblood	blood
49	chr10:89691400-89706400	Strong transcription	Primary B cells from peripheral blood	blood
50	chr10:89691600-89695600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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