Variant report

Variant	rs7085552
Chromosome Location	chr10:89600652-89600653
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs34140758	1.00[EUR][1000 genomes]
rs34144152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34260450	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34370865	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34826144	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34870602	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35304862	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35560700	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35593536	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35608752	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60189638	1.00[EUR][1000 genomes]
rs7896751	1.00[EUR][1000 genomes]
rs7897915	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7917439	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7917883	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9783193	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9783236	1.00[AMR][1000 genomes]
rs9783238	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89592800-89603200	Weak transcription	Aorta	Aorta
2	chr10:89593400-89600800	Weak transcription	A549	lung
3	chr10:89597400-89600800	Weak transcription	Hela-S3	cervix
4	chr10:89597800-89602200	Weak transcription	GM12878-XiMat	blood
5	chr10:89597800-89603000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr10:89597800-89604000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr10:89599400-89601000	Weak transcription	Stomach Mucosa	stomach
8	chr10:89599400-89601600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr10:89599800-89602000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:89600400-89600800	Weak transcription	Fetal Intestine Large	intestine
11	chr10:89600400-89603200	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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