Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10069370	0.85[CEU][hapmap]
rs1054256	0.92[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11242652	0.88[EUR][1000 genomes]
rs17160641	0.85[EUR][1000 genomes]
rs17160651	0.88[EUR][1000 genomes]
rs17160655	0.88[EUR][1000 genomes]
rs2163794	0.93[ASN][1000 genomes]
rs3846695	0.88[EUR][1000 genomes]
rs55696048	0.88[EUR][1000 genomes]
rs60986426	0.88[EUR][1000 genomes]
rs66778361	0.86[EUR][1000 genomes]
rs66825386	0.85[EUR][1000 genomes]
rs67120605	0.88[EUR][1000 genomes]
rs67479988	0.88[EUR][1000 genomes]
rs68142609	0.83[EUR][1000 genomes]
rs7716448	0.85[EUR][1000 genomes]
rs7736306	0.85[EUR][1000 genomes]
rs8180457	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs868548	0.88[EUR][1000 genomes]
rs9328022	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1549925	FBXL17	cis	intralobular white matter	BrainEAC

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107168000-107180200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:107175200-107176600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:107175200-107176600	Enhancers	Fetal Heart	heart
4	chr5:107175800-107176800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:107176200-107176600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr5:107176200-107176600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr5:107176200-107176800	Enhancers	Fetal Thymus	thymus
8	chr5:107176400-107176600	Bivalent Enhancer	Left Ventricle	heart
9	chr5:107176400-107177200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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