Variant report

Variant	rs17160641
Chromosome Location	chr5:107167046-107167047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11242652	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1549925	0.85[EUR][1000 genomes]
rs17160651	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17160655	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3846695	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55696048	0.97[EUR][1000 genomes]
rs60986426	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66778361	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66825386	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67120605	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67479988	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs68142609	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7716448	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7736306	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8180457	0.85[CEU][hapmap]
rs868548	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9328022	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107144400-107167600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:107162000-107167400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:107162200-107167200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:107162600-107167200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr5:107162600-107167600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr5:107166400-107168000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr5:107166400-107168600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr5:107166600-107167200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:107166600-107167400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr5:107166600-107168000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr5:107166600-107168000	Enhancers	NHDF-Ad	bronchial
12	chr5:107166600-107168200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr5:107166600-107168400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr5:107166800-107167800	Weak transcription	Pancreas	Pancrea
15	chr5:107166800-107168000	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr5:107166800-107170000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:107167000-107168200	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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