Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107172889..107174685-chr5:107177492..107179748,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10035487	0.84[CHB][hapmap]
rs10067015	0.87[EUR][1000 genomes]
rs10069370	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs1054256	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11242652	0.83[EUR][1000 genomes]
rs1549925	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17160641	0.83[EUR][1000 genomes]
rs17160651	0.83[EUR][1000 genomes]
rs17160655	0.83[EUR][1000 genomes]
rs2163794	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3846695	0.83[EUR][1000 genomes]
rs4957727	0.86[CHB][hapmap];0.91[GIH][hapmap]
rs55696048	0.83[EUR][1000 genomes]
rs60986426	0.83[EUR][1000 genomes]
rs66778361	0.81[EUR][1000 genomes]
rs66825386	0.83[EUR][1000 genomes]
rs67120605	0.83[EUR][1000 genomes]
rs67479988	0.83[EUR][1000 genomes]
rs68142609	0.81[EUR][1000 genomes]
rs7716448	0.83[EUR][1000 genomes]
rs7736306	0.83[EUR][1000 genomes]
rs8180457	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs868548	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv518663	chr5:107177381-107195824	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9328022	WDR36	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107168000-107180200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:107176600-107180200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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