Variant report

Variant	rs1550942
Chromosome Location	chr6:127887795-127887796
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1080436	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1318049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1374983	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1448056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1448057	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1512455	0.91[AFR][1000 genomes]
rs1512456	0.91[AFR][1000 genomes]
rs1512461	0.91[AFR][1000 genomes]
rs1512462	0.91[AFR][1000 genomes]
rs1512463	0.91[AFR][1000 genomes]
rs1588647	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1588648	0.91[AFR][1000 genomes]
rs1606331	0.91[AFR][1000 genomes]
rs1606333	0.91[AFR][1000 genomes]
rs1828612	0.85[AFR][1000 genomes]
rs1913079	0.85[AFR][1000 genomes]
rs1913080	0.91[AFR][1000 genomes]
rs1980060	0.91[AFR][1000 genomes]
rs2221878	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3948102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6920033	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs766819	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs766820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7746884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7747070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7749538	0.91[AFR][1000 genomes]
rs7749800	0.85[AFR][1000 genomes]
rs7751559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7751643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9385434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9398851	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs956693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966660	chr6:127838481-127890221	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830798	chr6:127841026-127987850	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127886600-127887800	Enhancers	Pancreas	Pancrea
2	chr6:127887400-127887800	Enhancers	Gastric	stomach
3	chr6:127887600-127888000	Enhancers	Stomach Mucosa	stomach

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