Variant report
| Variant | rs1448057 |
|---|---|
| Chromosome Location | chr6:127890367-127890368 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs1080436 | 0.89[CEU][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1318049 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1374983 | 1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1448055 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs1448056 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1512456 | 0.83[CEU][hapmap];0.90[YRI][hapmap] |
| rs1533186 | 0.82[CEU][hapmap] |
| rs1550942 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1606333 | 0.83[CEU][hapmap];0.90[YRI][hapmap] |
| rs2221878 | 0.96[CEU][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs3948102 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6569497 | 0.82[CEU][hapmap] |
| rs6920033 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6942097 | 0.95[CEU][hapmap] |
| rs766819 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs766820 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7746884 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs7747070 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7751559 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7751643 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7761797 | 0.81[CEU][hapmap] |
| rs7766541 | 0.82[CEU][hapmap] |
| rs9385434 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs9398851 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs956693 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs976089 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830798 | chr6:127841026-127987850 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:127887800-127892600 | Weak transcription | Gastric | stomach |
